1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatgcaacattacatcataaggtgagacccttcagaactgttgaactaacaggagttgtatatatatatataatttctaaaacagGAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAGCCAGGCGAGATTTCCGAAGTAGGTGTAGGAGAGCCAGAGGGCAACAAGA
species | Oryza sativa |
transcript | LOC_Os03g25140.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAG GAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAGEST: gi|58591586|gb|CF989894.1|CF989894
genomic: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAGgtatgcaaca ... tctaaaacagGAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAG
EST: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAGACAATTCAG GAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAGEST: gi|86851303|gb|CI312704.1|CI312704
genomic: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAGgtatgcaaca ... tctaaaacagGAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAG
EST: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAG GAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAGEST: gi|88980622|gb|CI026684.1|CI026684
genomic: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAGgtatgcaaca ... tctaaaacagGAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAG
EST: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAG GAAACTGAAAAGAAAGCGAGGAATCAGTTCAAAGGGCTGTTCGACAAGAAGEST: gi|3760751|gb|C98005.1|C98005
genomic: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAGgtatgcaaca ... tctaaaacagGAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAG
EST: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCNG GAAACTGAAAAGAAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAEST: gi|87012714|gb|CI295158.1|CI295158
genomic: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAGgtatgcaaca ... tctaaaacagGAAACTGAAAAG-AAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAA
EST: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAG GAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAGEST: gi|3760752|gb|C98006.1|C98006
genomic: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAGgtatgcaaca ... tctaaaacagGAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAG
EST: CAGA-CNTGATGCTACAGNTGCCCTTAATAAACTTAAACAAACAATTCAG GAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAGEST: gi|58586358|gb|CF984666.1|CF984666
genomic: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAGgtatgcaaca ... tctaaaacagGAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAG
EST: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAGACAATTCAG GAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAG
genomic: CAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAGgtatgcaaca ... tctaaaacagGAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAG
ttcagaactgttgaactaacaggagttgtatatatatatataatttctaaaacagGAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAGCCAGGCGAGATTTCCGAAGTAGGTGTAGGAGAGCCAGAGGGCAACAAGA
tttct CT-rich tract
agttgtatatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaacattacatcataaggtgagacccttcagaactgttgaactaacaggagttgtatatatatatataatttctaaaacagGAAACTGAAAAGAAAGCGAGGAAGCAGTTCAAAGGGCTGTTCGACAAGAAGCCAGGCGAGATTTCCGAAGTAGGTGTAGGAGAGCCAGAGGGCAACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA