1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtacgttaatttttttttgctcttaaagtttgaaattctatgaattatcctcacttaatgtgaaaagcagatatttggagacgtaatgtgtatggattcacttgttagtaacccatctcattaactgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG
species | Oryza sativa |
transcript | LOC_Os03g24220.3 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTEST: gi|58596217|gb|CK006745.1|CK006745
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTT
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|218486625|gb|FG969617.1|FG969617
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|58677092|gb|CK065779.1|CK065779
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|25798468|gb|CA754429.1|CA754429
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAACTTTCACTTCTTTTCGGGATGCGCTCAGAG AGTGGATCTAAGAGEST: gi|38568672|gb|CD670887.1|CD670887
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAG
EST: GAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|396941448|gb|HO188657.1|HO188657
genomic: GAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|29669712|gb|CB665987.1|CB665987
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|88718464|gb|CI741974.1|CI741974
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|58661440|gb|CK050120.1|CK050120
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|33674859|gb|CF303098.1|CF303098
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|58674368|gb|CK063054.1|CK063054
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCEST: gi|58673715|gb|CK062401.1|CK062401
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTC
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|58610643|gb|CK038355.1|CK038355
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|56157785|gb|C26501.2|C26501
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|58672631|gb|CK061317.1|CK061317
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|58612287|gb|CK039999.1|CK039999
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCAEST: gi|58652765|gb|CK041445.1|CK041445
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
EST: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAG AGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
genomic: GAAATTCATTTCAGAAGAAGCTTTCACTTCTTTTCGGAATGCGCTCAGAGgtacgttaat ... ctgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCA
gacgtaatgtgtatggattcacttgttagtaacccatctcattaactgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG
ttagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttaatttttttttgctcttaaagtttgaaattctatgaattatcctcacttaatgtgaaaagcagatatttggagacgtaatgtgtatggattcacttgttagtaacccatctcattaactgtttgcagAGTGGATCTAAGAGTTCAGGTGATGGTGGACCAACTCAGAGGGCATCAGCATTGGCTGCTCTTTCATCTGCATTCAACCCATCTTCCCAAAAGAATAAG
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