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gtaagttattggctttaatgatgatgtatcggatgcaccgacatcaactgaaagtactgttttgaagttgtacgattctcaaactcactgaaatctctaatcttcttgtggacactattttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCAGGAG
species | Oryza sativa |
transcript | LOC_Os02g58030.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTG GGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCEST: gi|87007099|gb|CI277174.1|CI277174
genomic: TTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGgtaagttatt ... ttttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTC
EST: TTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTG GGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCEST: gi|88271595|gb|CI387648.1|CI387648
genomic: TTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGgtaagttatt ... ttttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTC
EST: ATCTGTCGGACAACAATATGACAACACTCCCACCTGAGCTG GTTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCEST: gi|88263721|gb|CI366622.1|CI366622
genomic: ATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGgtaagttatt ... ttttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTC
EST: CTTGATCTGTCGTACAACAATATAACAACACTCCCACCTTAGCTG GG-TTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCEST: gi|88271454|gb|CI387507.1|CI387507
genomic: CTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGgtaagttatt ... ttttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTC
EST: TCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTG GGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCEST: gi|88266303|gb|CI377205.1|CI377205
genomic: TCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGgtaagttatt ... ttttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTC
EST: TATAACAACACTCCCACCTGAGCTG GGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCEST: gi|109713039|gb|CI105647.1|CI105647
genomic: TATAACAACACTCCCACCTGAGCTGgtaagttatt ... ttttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTC
EST: TTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTG GGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCEST: gi|86495873|gb|CI138506.1|CI138506
genomic: TTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGgtaagttatt ... ttttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTC
EST: TTGAGCTTGATCTGTCGGACAACAATATAACTACACTCCCACCTGAGCTG GGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTC
genomic: TTGAGCTTGATCTGTCGGACAACAATATAACAACACTCCCACCTGAGCTGgtaagttatt ... ttttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTC
cgattctcaaactcactgaaatctctaatcttcttgtggacactattttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCAGGAG
ctatttt CT-rich tract
actatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttattggctttaatgatgatgtatcggatgcaccgacatcaactgaaagtactgttttgaagttgtacgattctcaaactcactgaaatctctaatcttcttgtggacactattttgagcagGGTTTGCTTGAGCCTAACCTGCAAGTCTTGAAACTTGATGGAAATCCCCTCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA