1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tggaggtcttcagatttagaacatacggatttcttctcatgttttggacctatttgccttgtgcttatagctgatttcgctttgcttttcttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACAGACTGGAACAAGGCCAAGTGAGCAATTTTCCTGCCGGACTATAGTACT
species | Oryza sativa |
transcript | LOC_Os02g56110.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTCAGTTACTCAA-GGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|86513303|gb|CI155936.1|CI155936
genomic: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|88834673|gb|CI077956.1|CI077956
genomic: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|87035932|gb|CI190554.1|CI190554
genomic: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTCCAGTGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|87040668|gb|CI195290.1|CI195290
genomic: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTGCAGTGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|88839114|gb|CI378038.1|CI378038
genomic: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|88254326|gb|CI352952.1|CI352952
genomic: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: TGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|88846148|gb|CI372916.1|CI372916
genomic: TGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|87035931|gb|CI190553.1|CI190553
genomic: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTGCAGTGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|86479948|gb|CI122581.1|CI122581
genomic: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|89176384|gb|CI043405.1|CI043405
genomic: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAG AAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACEST: gi|88515451|gb|CI443105.1|CI443105
genomic: ATGGTTCAGTTACTCAAGGGTTCAGTGTCACCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
EST: CCAATAACCAACATGGGCAG AAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
genomic: CCAATAACCAACATGGGCAGgtatgtggag ... ttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGAC
ggacctatttgccttgtgcttatagctgatttcgctttgcttttcttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACAGACTGGAACAAGGCCAAGTGAGCAATTTTCCTGCCGGACTATAGTACT
agctgat putative branch site (score: 4)
tttcgctttgcttttc CT-rich tract
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaggtcttcagatttagaacatacggatttcttctcatgttttggacctatttgccttgtgcttatagctgatttcgctttgcttttcttctgaacagAAACCACTTGCAATGCGTATCCGGATGTCATACAAAGTGAATGGTGAGGACAGACTGGAACAAGGCCAAGTGAGCAATTTTCCTGCCGGACTATAGTACT
- - - - - - - - - gaacata
- - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtgc