1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...tttttgtatttataggaaaaactttgcaagtaaaatgatggttttgttttaacattgctctgacactgatgggggttttcttatggctatgttatttcagTTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAGATGATTATATTTGAGAAGGGAGATCTGGTATTTGTGTTCAACTTCCATT
species | Oryza sativa |
transcript | LOC_Os02g32660.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GCGCGATGCAGTCTCTCGAGGAAAAATATGGG TTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAGEST: gi|88412500|gb|CI688850.1|CI688850
genomic: GCGCGATGCAGTCTCTCGAGGAAAAATATGGGgtatgttgta ... gttatttcagTTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAG
EST: ATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGG TTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAGEST: gi|88851918|gb|CI679476.1|CI679476
genomic: ATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGGgtatgttgta ... gttatttcagTTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAG
EST: ATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGG TTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAGEST: gi|88582727|gb|CI700155.1|CI700155
genomic: ATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGGgtatgttgta ... gttatttcagTTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAG
EST: ATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGG TTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAGEST: gi|86479150|gb|CI121783.1|CI121783
genomic: ATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGGgtatgttgta ... gttatttcagTTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAG
EST: GCATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGG TTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAGEST: gi|88432744|gb|CI690588.1|CI690588
genomic: GCATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGGgtatgttgta ... gttatttcagTTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAG
EST: ATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGG TTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAGEST: gi|66947037|gb|AU311881.1|AU311881
genomic: ATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGGgtatgttgta ... gttatttcagTTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAG
EST: GCATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGG TTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAG
genomic: GCATGCTAGAGTTTGACCGCGCGATGCAGTCTCTCGAGGAAAAATATGGGgtatgttgta ... gttatttcagTTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAG
gttttaacattgctctgacactgatgggggttttcttatggctatgttatttcagTTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAGATGATTATATTTGAGAAGGGAGATCTGGTATTTGTGTTCAACTTCCATT
ttatttc CT-rich tract
tatgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgtatttataggaaaaactttgcaagtaaaatgatggttttgttttaacattgctctgacactgatgggggttttcttatggctatgttatttcagTTCATGACATCAGACCACCAGTACATATCTCGAAAGCATGAAGAGGATAAGATGATTATATTTGAGAAGGGAGATCTGGTATTTGTGTTCAACTTCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - -aggaaaa
- - - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - - -aatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttatg