1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...tgttattatcatactaaacagatggaaaaaatcagtagttttgtatttactactagtatcttcatgtaatatgtgtgcattggtttttcgttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTACACCCACAGGGAGCTCCCTTTGCAGTGAG
species | Oryza sativa |
transcript | LOC_Os01g62900.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATG CATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTAEST: gi|428854|gb|D25010.1|D25010
genomic: GGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATGgtagggttat ... ttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTA
EST: ATACATGCTCGGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATG CATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTAEST: gi|87028718|gb|CI349437.1|CI349437
genomic: ATACATGCTCGGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATGgtagggttat ... ttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTA
EST: CTAACAACTCGATG CATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTAEST: gi|44670561|gb|CR283995.1|CR283995
genomic: CTAACAACTCGATGgtagggttat ... ttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTA
EST: CGGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATG CATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTAEST: gi|38471160|gb|CF955291.1|CF955291
genomic: CGGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATGgtagggttat ... ttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTA
EST: ATACATGCTCGGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATG CATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTAEST: gi|88265249|gb|CI369023.1|CI369023
genomic: ATACATGCTCGGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATGgtagggttat ... ttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTA
EST: TCGGGGGCCTGTT-GCGTTGATGGACTCCTAACAACTCGATG CATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTAEST: gi|88273346|gb|CI388802.1|CI388802
genomic: TCGGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATGgtagggttat ... ttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTA
EST: GGCGTTGATGGACTCCTAACAACTCGATG CATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTAEST: gi|88261597|gb|CI365173.1|CI365173
genomic: GGCGTTGATGGACTCCTAACAACTCGATGgtagggttat ... ttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTA
EST: ATACATGCTCGGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATG CATTTTACGAGGAAGTGGACAAGTAGTGAACGCCGACAAGGGAGTTGTTTA
genomic: ATACATGCTCGGGGGCCTGTTGGCGTTGATGGACTCCTAACAACTCGATGgtagggttat ... ttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTA
tttactactagtatcttcatgtaatatgtgtgcattggtttttcgttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTACACCCACAGGGAGCTCCCTTTGCAGTGAG
tttttcgtt CT-rich tract
tttttcgttatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttattatcatactaaacagatggaaaaaatcagtagttttgtatttactactagtatcttcatgtaatatgtgtgcattggtttttcgttatatatagCATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTACACCCACAGGGAGCTCCCTTTGCAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatt