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gtattagactttttttcaaattgctctaatcatgagtattaagctcagttttcatcactagatagggatcacgggctataaatgaaagaggaaaaatgtaaatatcttaaaagaggattaacaaagtatatgacgtgttacagttgaatgtgagctcttatcatttgtcaattctactgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTGATCAAACTGCACCAGCATCAGCAAGGTCCTCGGTGGATGGGTGGGGTGA
species | Oryza sativa |
transcript | LOC_Os01g60440.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TGCAAATGCTAGCAACTCTCAAATTTGAGCAACCTCCAGTGTCACATCAG ATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTGEST: gi|29656612|gb|CB652887.1|CB652887
genomic: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAGgtattagact ... actgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTG
EST: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAG ATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTGEST: gi|58603390|gb|CK013918.1|CK013918
genomic: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAGgtattagact ... actgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTG
EST: TGGAAATGCTAGCAACTCTCAAATTTCAGCAAGCGCCAGTGTCACATCAG ATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTGEST: gi|300215776|gb|HO088402.1|HO088402
genomic: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAGgtattagact ... actgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTG
EST: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAG ATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTGEST: gi|29640582|gb|CB645591.1|CB645591
genomic: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAGgtattagact ... actgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTG
EST: TGCAAATGCTACCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAG ATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTGEST: gi|218482575|gb|FG966889.1|FG966889
genomic: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAGgtattagact ... actgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTG
EST: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAG ATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTGEST: gi|218497307|gb|FG954387.1|FG954387
genomic: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAGgtattagact ... actgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTG
EST: CTCCAGTGTCACATCAG ATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTGEST: gi|38477603|gb|CF961736.1|CF961736
genomic: CTCCAGTGTCACATCAGgtattagact ... actgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTG
EST: TCAAATTTCAG--ACCTCCAGTGTCACATCCAG ATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTGTGGCTCTCTTEST: gi|33675788|gb|CF304027.1|CF304027
genomic: TCAAATTTCAGCAACCTCCAGTGTCACAT-CAGgtattagact ... actgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTT
EST: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAG ATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTG
genomic: TGCAAATGCTAGCAACTCTCAAATTTCAGCAACCTCCAGTGTCACATCAGgtattagact ... actgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTG
tgacgtgttacagttgaatgtgagctcttatcatttgtcaattctactgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTGATCAAACTGCACCAGCATCAGCAAGGTCCTCGGTGGATGGGTGGGGTGA
ttctact CT-rich tract
ttatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattagactttttttcaaattgctctaatcatgagtattaagctcagttttcatcactagatagggatcacgggctataaatgaaagaggaaaaatgtaaatatcttaaaagaggattaacaaagtatatgacgtgttacagttgaatgtgagctcttatcatttgtcaattctactgtcacagATAATAGATCTTCCACCGTAGCATATGCACCATCCACTTCTAGCTCTCTTGATCAAACTGCACCAGCATCAGCAAGGTCCTCGGTGGATGGGTGGGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA