1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatgtcgtttactctagtcacactttccacgaccatccaggtcctgtgccaaaaaaccgtggcctctgacacggccaatcgttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAGCTGCATGTACACCCCCGTATACCGCAGCTACCGGTAACGCCGCGGAGG
species | Oryza sativa |
transcript | LOC_Os01g09320.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: GATTTCTGCTCGCATTGGCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88990345|gb|CI107771.1|CI107771
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|29668943|gb|CB665218.1|CB665218
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|58689010|gb|CK077697.1|CK077697
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|218502213|gb|FG961004.1|FG961004
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88833457|gb|CI076938.1|CI076938
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: AAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|29640538|gb|CB645547.1|CB645547
genomic: AAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|58668327|gb|CK057013.1|CK057013
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|58604549|gb|CK015077.1|CK015077
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|86594283|gb|CI251155.1|CI251155
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|15856430|gb|BI809242.1|BI809242
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88512373|gb|CI439879.1|CI439879
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|29642463|gb|CB647470.1|CB647470
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|87040607|gb|CI195229.1|CI195229
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|218493259|gb|FG949070.1|FG949070
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|86483558|gb|CI126191.1|CI126191
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88198812|gb|CI197209.1|CI197209
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|58671293|gb|CK059979.1|CK059979
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCANGGATCTGGAGAAATACGCAGAGAEST: gi|29630820|gb|CB635829.1|CB635829
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|18388384|gb|BM421582.1|BM421582
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: ATTTCTGCTCGCATTGCCGCACAGCGTGGCTGC-AAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88259293|gb|CI363586.1|CI363586
genomic: ATTTCTGCTCGCATTGCCGCA-AGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGCCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88961240|gb|CI096644.1|CI096644
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88512003|gb|CI439509.1|CI439509
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCGGCAAGCGTGGCTGCAAAAGCCTAT-AACTTG GAGCTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGEST: gi|29663066|gb|CB659341.1|CB659341
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGA-CTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAG
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88985680|gb|CI016389.1|CI016389
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|72301619|gb|AJ864895.1|AJ864895
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GCCGC-AGCTTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|29625639|gb|CB630650.1|CB630650
genomic: GCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|38474181|gb|CF958313.1|CF958313
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATAGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|86545297|gb|CI185503.1|CI185503
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCTTATGTACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|89184779|gb|CI048335.1|CI048335
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|89197307|gb|CI052037.1|CI052037
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|55410640|gb|CV723016.1|CV723016
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88440620|gb|CI552086.1|CI552086
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|87041398|gb|CI196020.1|CI196020
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|29645566|gb|CB650573.1|CB650573
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|33811753|gb|CF331763.1|CF331763
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGATGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|29626361|gb|CB631372.1|CB631372
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88246248|gb|CI246097.1|CI246097
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|15858197|gb|BI811009.1|BI811009
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|87041092|gb|CI195714.1|CI195714
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|89195350|gb|CI051463.1|CI051463
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|29681753|gb|CB678028.1|CB678028
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|29626362|gb|CB631373.1|CB631373
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|86518820|gb|CI159026.1|CI159026
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88248955|gb|CI248804.1|CI248804
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88197857|gb|CI197707.1|CI197707
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|58679004|gb|CK067691.1|CK067691
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|18141696|gb|AJ302310.1|AJ302310
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: AAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|218497744|gb|FG966597.1|FG966597
genomic: AAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88198739|gb|CI198589.1|CI198589
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|86428472|gb|CI075153.1|CI075153
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATTTGGAGAAATACGCAGAGAEST: gi|88974407|gb|CI020059.1|CI020059
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88482434|gb|CI419705.1|CI419705
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCNCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|86519039|gb|CI159245.1|CI159245
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|89188222|gb|CI115471.1|CI115471
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|14192241|gb|AU184452.1|AU184452
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATNTGGAGAAATACGCAGAGAEST: gi|88408835|gb|CI554157.1|CI554157
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|86868990|gb|CI334362.1|CI334362
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: TATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGGTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAEST: gi|88840801|gb|CI080255.1|CI080255
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
EST: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTG GACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
genomic: GATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAACTTGgtatgtcgtt ... ttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGA
ccaggtcctgtgccaaaaaaccgtggcctctgacacggccaatcgttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAGCTGCATGTACACCCCCGTATACCGCAGCTACCGGTAACGCCGCGGAGG
ctctgac putative branch site (score: 3)
tcgttct putative PPT
aaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcgtttactctagtcacactttccacgaccatccaggtcctgtgccaaaaaaccgtggcctctgacacggccaatcgttctgtgcagGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAGCTGCATGTACACCCCCGTATACCGCAGCTACCGGTAACGCCGCGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT