1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtatgtaacaatgttattgcctgcccttgtatttaatcgaaaaatacaccttagcatattttttatcatacaaaactactgtctaattcattttattaccactgacgctaatactagggtccccaaaatttctaaatgagagttccactttcctttttcagGTACAACCGCCGAAAGTAGAAGACCCGCTAACTTGTAGTAGCGTGTTTTCCTCACTGGGAATTTATTGCATTCCCTTGTATCAATTTTGACCGACTGATC
species | Oryza sativa |
transcript | LOC_Os12g29660.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AATAATGTTATGCGAAAGAAATCGAAAAATTCTTTTAAGAGCAAATCCAG GTACAACCGCCGAAAGTAGAAGACCCGCTAACTTNTAGTAGCGTGTTTTCCEST: gi|88437981|gb|CI536140.1|CI536140
genomic: AATAATGTTATGCGAAAGAAATCGAAAAATTCTTTTAAGAGCAAATCCAGgtatgtaaca ... cctttttcagGTACAACCGCCGAAAGTAGAAGACCCGCTAACTTGTAGTAGCGTGTTTTCC
EST: AATAATGTTATGCGAAAGAAATCGAAAAATTCTTTTAAGAGCAAATCCAG GTACAACCGCCGAAAGTAGAAGACCCGCTAACTTGTAGTAGCGTGTTTTCCEST: gi|88966756|gb|CI365979.1|CI365979
genomic: AATAATGTTATGCGAAAGAAATCGAAAAATTCTTTTAAGAGCAAATCCAGgtatgtaaca ... cctttttcagGTACAACCGCCGAAAGTAGAAGACCCGCTAACTTGTAGTAGCGTGTTTTCC
EST: AATAATGTTATGCGAAAGAAATCGAAAAATTCTTTTAAGAGCAAATCCAG GTACAACCGCCGAAAGTAGAAGACCCGCTAACTTGTAGTAGCGTGTTTTCCEST: gi|88295723|gb|CI532684.1|CI532684
genomic: AATAATGTTATGCGAAAGAAATCGAAAAATTCTTTTAAGAGCAAATCCAGgtatgtaaca ... cctttttcagGTACAACCGCCGAAAGTAGAAGACCCGCTAACTTGTAGTAGCGTGTTTTCC
EST: AATAATGTTATGCGAAAGAAATCGAAAAATTCTTTTAAGAGCAAATCCAG GTACAACCGCCGAAAGTAGAAGACCCGCTAACTTGTAGTAGCGTGTTTTCC
genomic: AATAATGTTATGCGAAAGAAATCGAAAAATTCTTTTAAGAGCAAATCCAGgtatgtaaca ... cctttttcagGTACAACCGCCGAAAGTAGAAGACCCGCTAACTTGTAGTAGCGTGTTTTCC
gctaatactagggtccccaaaatttctaaatgagagttccactttcctttttcagGTACAACCGCCGAAAGTAGAAGACCCGCTAACTTGTAGTAGCGTGTTTTCCTCACTGGGAATTTATTGCATTCCCTTGTATCAATTTTGACCGACTGATC
ttctaaa putative branch site (score: 39)
ttccactttccttttt putative PPT
aaaatttctaaatga TA-rich tract