1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtatccttgtgtcattttgcacattcgaaagggttatcttgtcaaatgctgaccaatgtcctattaatttttgcagTGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT
species | Oryza sativa |
transcript | LOC_Os12g13590.2 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAG TGGTAGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCGEST: gi|87029720|gb|CI274401.1|CI274401
genomic: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAGgtatccttgt ... atttttgcagTGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCG
EST: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAG TGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCGEST: gi|66920327|gb|CX107175.1|CX107175
genomic: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAGgtatccttgt ... atttttgcagTGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCG
EST: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAG TGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCGEST: gi|88974506|gb|CI022047.1|CI022047
genomic: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAGgtatccttgt ... atttttgcagTGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCG
EST: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAG TGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCGEST: gi|58666677|gb|CK055363.1|CK055363
genomic: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAGgtatccttgt ... atttttgcagTGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCG
EST: GGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAG TGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCGEST: gi|33689213|gb|CF317452.1|CF317452
genomic: GGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAGgtatccttgt ... atttttgcagTGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCG
EST: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAG TGGTAGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCGEST: gi|87029773|gb|CI274454.1|CI274454
genomic: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAGgtatccttgt ... atttttgcagTGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCG
EST: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAG TGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCG
genomic: TTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAGgtatccttgt ... atttttgcagTGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCG
cattcgaaagggttatcttgtcaaatgctgaccaatgtcctattaatttttgcagTGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT
tattaat putative branch site (score: 2)
tttttgc CT-rich tract
tcctattaattttt TA-rich tract