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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttattatagaattgtgcttgtatgttccgtagtgatgatatgtatgatggttaccagaaaggctaatgaattattgaccttatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG

Basic information

species Oryza sativa
transcript LOC_Os10g11140.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89198777|gb|CI003514.1|CI003514
EST:     GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATG                         GAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
genomic: GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATGgttggttatt ... tatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
EST: gi|24468665|gb|CA305614.1|CA305614
EST:     ATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATG                         GAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
genomic: ATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATGgttggttatt ... tatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
EST: gi|24468739|gb|CA305688.1|CA305688
EST:     GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATG                         GAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
genomic: GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATGgttggttatt ... tatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
EST: gi|88849912|gb|CI001618.1|CI001618
EST:     GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATG                         GAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
genomic: GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATGgttggttatt ... tatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
EST: gi|86892654|gb|CI312043.1|CI312043
EST:     GAGCATCTTAGAGATGTGATCGCAAAAAAGCAAGCCTGGAGAGAAATATG                         GAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
genomic: GAGCATCTTAGAGATGTGATCGC-AAAAAGCAAGCCTGGAGAGAAATATGgttggttatt ... tatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
EST: gi|58611262|gb|CK038974.1|CK038974
EST:     GGAGCATCTTAGAGATGTGATCGCAAAGAGCAAGCCTGGAGAGAAATATG                         GAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
genomic: GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATGgttggttatt ... tatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
EST: gi|44665085|gb|CR278519.1|CR278519
EST:     GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATG                         GAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
genomic: GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATGgttggttatt ... tatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
EST: gi|86503671|gb|CI146304.1|CI146304
EST:     GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATG                         GAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
genomic: GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATGgttggttatt ... tatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
EST: gi|29681951|gb|CB678226.1|CB678226
EST:     GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATG                         GAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
genomic: GGAGCATCTTAGAGATGTGATCGCAAAAAGCAAGCCTGGAGAGAAATATGgttggttatt ... tatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatgtatgatggttaccagaaaggctaatgaattattgaccttatgatgtagGAAACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCG
                                    tattgac  putative branch site (score: 2)
                            taatgaattattga  TA-rich tract