1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ttgtgttccacactatcacattttatttgattggaggaggatatcatctttgttatatggatgatcaggatggatagtatattaactcttaaacatgtagGTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGGCCCGTGAATAAAGATTCTCTGTTGGGAAGATTCATTGATGGAACCGATG
species | Oryza sativa |
transcript | LOC_Os08g34060.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG GTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGGEST: gi|29622067|gb|CB627078.1|CB627078
genomic: TCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAGgtaattattg ... aaacatgtagGTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGG
EST: TCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG GTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGGEST: gi|29623531|gb|CB628542.1|CB628542
genomic: TCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAGgtaattattg ... aaacatgtagGTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGG
EST: TCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG GTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGGEST: gi|86499063|gb|CI141696.1|CI141696
genomic: TCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAGgtaattattg ... aaacatgtagGTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGG
EST: TGGTCATAAACTTGCAG GTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGGEST: gi|14571409|gb|BI118777.1|BI118777
genomic: TGGTCATAAACTTGCAGgtaattattg ... aaacatgtagGTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGG
EST: TCAGAAGCTGCAGAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG GTTCCAGCGAAGCCAAACTATAACTTGGTCATGT
genomic: TCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAGgtaattattg ... aaacatgtagGTTCCAGCGAAGCCAAACTATAACTTGGTCATGT
atctttgttatatggatgatcaggatggatagtatattaactcttaaacatgtagGTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGGCCCGTGAATAAAGATTCTCTGTTGGGAAGATTCATTGATGGAACCGATG
tattaac putative branch site (score: 1)
tatattaactcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgttccacactatcacattttatttgattggaggaggatatcatctttgttatatggatgatcaggatggatagtatattaactcttaaacatgtagGTTCCAGCGAAGCCAAACTATAACTTGGTCATGTACTACGCAGCAGAAAGGCCCGTGAATAAAGATTCTCTGTTGGGAAGATTCATTGATGGAACCGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA