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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttatacatctgttttgggccttctcatccctgatgatttatttacatgcacattcattagttcgatccttggtacttttgtcttgttgggaatttcagGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCACATCCACCAGGGTCGCCATACTCGCTCAACTAGTGCAATTCCGAAAAGC

Basic information

species Oryza sativa
transcript LOC_Os08g22864.2
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3107852|gb|D43592.1|D43592
EST:     TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAG                         GGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGG
genomic: TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAGgtaaatcatc ... ggaatttcagG-CTTGGAGAGTCATTCATTAATTCATCTACCATGTTGG
EST: gi|29665535|gb|CB661810.1|CB661810
EST:     TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAG                         GCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAA-TCA
genomic: TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAGgtaaatcatc ... ggaatttcagGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCA
EST: gi|218497128|gb|FG954379.1|FG954379
EST:     TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAG                         GCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCA
genomic: TTAGCATCTCTTAGTGATTCATTGGAATATTTAGCGGATTCAGTTGAAAGgtaaatcatc ... ggaatttcagGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatgcacattcattagttcgatccttggtacttttgtcttgttgggaatttcagGCTTGGAGAGTCATTCATTAATTCATCTACCATGTTGGAGAACAAAAATCACATCCACCAGGGTCGCCATACTCGCTCAACTAGTGCAATTCCGAAAAGC
        attcatta  TA-rich tract