1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...cccatgctgcaagaaagttctattattttagtaatttagtttacacggttctcaacaatgtaatctgtgaattggtcacgaccatttttcatctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCACAAGAAGCAGAGACTGGACAG
species | Oryza sativa |
transcript | LOC_Os08g19850.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTTTCATGTTGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|88974311|gb|CI019984.1|CI019984
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|58669943|gb|CK058629.1|CK058629
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTTGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|24208843|gb|AU225870.1|AU225870
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|86430588|gb|CI083011.1|CI083011
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTAGCCATCGACGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|88411730|gb|CI521453.1|CI521453
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAANAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|88488406|gb|CI425677.1|CI425677
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: ACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|29622569|gb|CB627580.1|CB627580
genomic: ACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTTGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|88382609|gb|CI535817.1|CI535817
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|8956784|gb|BE230587.1|BE230587
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|88219267|gb|CI218827.1|CI218827
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|88197260|gb|CI197110.1|CI197110
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|58606862|gb|CK034895.1|CK034895
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTTGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|88321457|gb|CI535409.1|CI535409
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|88974365|gb|CI020038.1|CI020038
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCAEST: gi|58674470|gb|CK063157.1|CK063157
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
EST: CTGGTTTTCATGTTGCCATCGATGAGACAGACAGGACAATACAGAAGAAG GTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
genomic: CTGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGgtagttccat ... atctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCA
cggttctcaacaatgtaatctgtgaattggtcacgaccatttttcatctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCACAAGAAGCAGAGACTGGACAG
ccatttttcatcttt CT-rich tract
atttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccatgctgcaagaaagttctattattttagtaatttagtttacacggttctcaacaatgtaatctgtgaattggtcacgaccatttttcatctttgcagGTACGGGAGGCTCAATTAGCCCAATTCAACTACATTCTTGTCGTTGGTGCACAAGAAGCAGAGACTGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - tgctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - caacaat