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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatttttattatacaggaattcagacaacaaaattttcaaatgatttattctttctggtgtgcgctggtgtctacagAACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCAAGTTAGCTACAAATAATTACAGTTCCCAAAACATTCTTGGGGAAGGTGG

Basic information

species Oryza sativa
transcript LOC_Os08g10320.3
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688732|gb|CK077419.1|CK077419
EST:     AATATTTATGTTCATAAAGAAGAGAAGAAGACTTGCACAACAGCAAGGAG                         AACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCA
genomic: AATATTTATGTTCATAAAGAAGAGAAGAAGACTTGCACAACAGCAAGGAGgtaaatattt ... gtgtctacagAACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCA
EST: gi|29620863|gb|CB625874.1|CB625874
EST:     AATATTTATGTTCATAAAGAAGAGAAGAAGACTTGCACAACAGCAAGGAG                         AACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCA
genomic: AATATTTATGTTCATAAAGAAGAGAAGAAGACTTGCACAACAGCAAGGAGgtaaatattt ... gtgtctacagAACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCA
EST: gi|29630198|gb|CB635207.1|CB635207
EST:     AATATTTATGTTCATAAAGAAGAGAAGAAGACTTGCACAACAGCAAGGAG                         AACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCA
genomic: AATATTTATGTTCATAAAGAAGAGAAGAAGACTTGCACAACAGCAAGGAGgtaaatattt ... gtgtctacagAACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCA
EST: gi|29623048|gb|CB628059.1|CB628059
EST:     AATATTTATGTTCATAAAGAAGAGAAGAAGACTTGCACAACAGCAAGGAG                         AACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCA
genomic: AATATTTATGTTCATAAAGAAGAGAAGAAGACTTGCACAACAGCAAGGAGgtaaatattt ... gtgtctacagAACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCA
EST: gi|29615848|gb|CB620860.1|CB620860
EST:     AATATTTATGTTCATAAAGAAGAGAAGAAGACTTGCACAACAGCAAGGAG                         AACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCA
genomic: AATATTTATGTTCATAAAGAAGAGAAGAAGACTTGCACAACAGCAAGGAGgtaaatattt ... gtgtctacagAACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacaacaaaattttcaaatgatttattctttctggtgtgcgctggtgtctacagAACTGTACAACCTAGTTGGACGGCCTGATGTCTTCAGTAATGCTGAACTCAAGTTAGCTACAAATAATTACAGTTCCCAAAACATTCTTGGGGAAGGTGG
     acaaaattttcaaatg  TA-rich tract