1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatagattgctattgttcatttagcaattttgattttgttttcatatttttctctctgcctattttttttctccttgttttgataagacattttgctcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT
species | Oryza sativa |
transcript | LOC_Os07g49270.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|58694980|gb|CK083667.1|CK083667
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|29671781|gb|CB668056.1|CB668056
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|86513328|gb|CI155961.1|CI155961
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: GAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|86481989|gb|CI124622.1|CI124622
genomic: GAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACCACTACAAAAGAGGTCATGATGGCAATGACEST: gi|86437389|gb|CI119111.1|CI119111
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCGAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCGTGATGGCAATGACEST: gi|89169860|gb|CI110219.1|CI110219
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|33675288|gb|CF303527.1|CF303527
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGNGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|88221174|gb|CI221130.1|CI221130
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: GGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|29663750|gb|CB660025.1|CB660025
genomic: GGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|86478852|gb|CI121485.1|CI121485
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTCCAAAAGAGGTCATGATGGCAATGACEST: gi|86477898|gb|CI120531.1|CI120531
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: GTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|8527210|gb|AU092025.1|AU092025
genomic: GTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|86437366|gb|CI119088.1|CI119088
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|88273930|gb|CI394336.1|CI394336
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: CAGTCTGGTTTCTCTCATAGGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAEST: gi|88966319|gb|CI119454.1|CI119454
genomic: CAGTCTGGTTTCTCTCATA-GGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGA
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|87030186|gb|CI270196.1|CI270196
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: TTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|86477978|gb|CI120611.1|CI120611
genomic: TTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|58695027|gb|CK083714.1|CK083714
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|218478545|gb|FG960299.1|FG960299
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCCAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|8527425|gb|AU092240.1|AU092240
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AATTGCTAGGNAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|163927650|gb|EG712446.1|EG712446
genomic: AATTGCTAGG-AATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|86481726|gb|CI124359.1|CI124359
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|86827161|gb|CI270859.1|CI270859
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: TGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|86436955|gb|CI118677.1|CI118677
genomic: TGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|86477298|gb|CI119931.1|CI119931
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|163926592|gb|EG713608.1|EG713608
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCGGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|87027426|gb|CI272191.1|CI272191
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACEST: gi|88966359|gb|CI119494.1|CI119494
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
EST: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAG TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
genomic: AAATTGCTAGGAATTCTGTGTACCAGTCTGGTTTCTCTCATAGGCTCAAGgtatagattg ... tcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGAC
ctctctgcctattttttttctccttgttttgataagacattttgctcttgtatagTCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT
ttttgat putative branch site (score: 37)
ttttgctctt putative PPT
tattttttttct TA-rich tract