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gtatactctttagatcttatcggaataaatgatggcttcatggatcatgggcaagaaattaacttttgttcttgtgcgcttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATCCAACCTCAATGTTACTGTGAAGCTAAAGATCATCAAAACTATTCTTCCC
species | Oryza sativa |
transcript | LOC_Os07g22720.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATG GTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATCEST: gi|88955792|gb|CI092081.1|CI092081
genomic: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
EST: GCAACAATGAGCTGTGATCACAGGGTTATTGATG GTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATCEST: gi|89183783|gb|CI046348.1|CI046348
genomic: GCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
EST: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATG GTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATCEST: gi|89192614|gb|CI049912.1|CI049912
genomic: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
EST: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATG GTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATCEST: gi|88839241|gb|CI000713.1|CI000713
genomic: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
EST: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATG GTGCAGTCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATCEST: gi|89186760|gb|CI052173.1|CI052173
genomic: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
EST: TCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATG GTGCCATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
genomic: TCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
ggcttcatggatcatgggcaagaaattaacttttgttcttgtgcgcttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATCCAACCTCAATGTTACTGTGAAGCTAAAGATCATCAAAACTATTCTTCCC
cttactct CT-rich tract
aagaaattaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactctttagatcttatcggaataaatgatggcttcatggatcatgggcaagaaattaacttttgttcttgtgcgcttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATCCAACCTCAATGTTACTGTGAAGCTAAAGATCATCAAAACTATTCTTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA