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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtcaccatagttgatttgcattcatttgtgcattttgtcagcatatgagatgttcaaattgacagtaatttcgttttattccacagAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGGTTTCGACACTACTAGTC

Basic information

species Oryza sativa
transcript LOC_Os07g22400.2
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86259469|gb|CI065342.1|CI065342
EST:     ATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAG                         AATCAAGCAGTGCAGAGCCAAGGAACAACCTTAACTGTAATGCTGCTGGCA
genomic: ATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGgtgggtcacc ... tattccacagAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCA
EST: gi|88228226|gb|CI227706.1|CI227706
EST:     ATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAG                         AATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCA
genomic: ATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGgtgggtcacc ... tattccacagAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgtcagcatatgagatgttcaaattgacagtaatttcgttttattccacagAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGGTTTCGACACTACTAGTC
                         aattgac  putative branch site (score: 3)
                                     tttcgttttattcc  putative PPT
                                  taatttcgttttatt  TA-rich tract