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...tttctgcctagtgatctgtcctgttcagctgttctgctctggaaatccaaatcaaccgtaaccctaatcgtttcgtaatttctgaattcgtaatttgcagCTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGCCTCCCAGTTTCTGGAAAGAAAGAGGCACTCGTCAGCAGAATCTTGACTC
species | Oryza sativa |
transcript | LOC_Os07g08729.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AGTAGTAAAGTGCAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAG CTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGCEST: gi|88256684|gb|CI359072.1|CI359072
genomic: AG-AGAAAAGTGCAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAGgtaagcatgc ... taatttgcagCTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGC
EST: CAGAGAAAAGTGCAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAG CTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGCEST: gi|58687994|gb|CK076681.1|CK076681
genomic: CAGAGAAAAGTGCAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAGgtaagcatgc ... taatttgcagCTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGC
EST: CAGAGAAAAGTGCAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAG CTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGCEST: gi|88959987|gb|CI381865.1|CI381865
genomic: CAGAGAAAAGTGCAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAGgtaagcatgc ... taatttgcagCTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGC
EST: CAGAGAAAAGTGCAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAG CTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGCEST: gi|568027|gb|D38862.1|D38862
genomic: CAGAGAAAAGTGCAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAGgtaagcatgc ... taatttgcagCTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGC
EST: CAGAGAAAAGTGCAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAG CTGAAGGACATGACGGTGGTGGNCTTGAAATCTTACCTGAGTGCACATGGCEST: gi|88268594|gb|CI378529.1|CI378529
genomic: CAGAGAAAAGTGCAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAGgtaagcatgc ... taatttgcagCTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGC
EST: CAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAG CTGAAGGACATGACGTTGGTGGACTTGAAATCTTACCTGAGTGCACATGGC
genomic: CAGCACATAATTGGGCAGAACTTGCGGATACTGGAAAGgtaagcatgc ... taatttgcagCTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGC
tccaaatcaaccgtaaccctaatcgtttcgtaatttctgaattcgtaatttgcagCTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGCCTCCCAGTTTCTGGAAAGAAAGAGGCACTCGTCAGCAGAATCTTGACTC
ccctaat putative branch site (score: 10)
taatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgcctagtgatctgtcctgttcagctgttctgctctggaaatccaaatcaaccgtaaccctaatcgtttcgtaatttctgaattcgtaatttgcagCTGAAGGACATGACGGTGGTGGACTTGAAATCTTACCTGAGTGCACATGGCCTCCCAGTTTCTGGAAAGAAAGAGGCACTCGTCAGCAGAATCTTGACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-ttctgcc
- - - - - - - - tgtcctg
- - - - - - - - - - - - tcagctg
- - - - - - - - - - - - - - - -ttctgct
- - - - - - - - - - - - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctga