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gtatgctaacaggcactattcactcaacagtgtcttcattctacacttcactttaaactctacatgtgaggattacttcccctaacaatttatttcttttcaatttgaatgtttcttttcagTTGCTCAAGGAGTTCCAGACATCATTCCCAACACTAGAATTTCCTCCCTGTCCTTCACAAGGGGACTTCGATGTGAGAGAAGTTCTTGCTTCAACCTACT
species | Oryza sativa |
transcript | LOC_Os06g44230.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TACTGAGAGAACAATTTGTGGAGCTTTACAGCATGCCAATTCTTGAAAAT TTGCTCAAGGAGTTCCAGACATCATTCCCAACACTAGGAATTTCCTCCCTGEST: gi|55412007|gb|CV724383.1|CV724383
genomic: TACTGAGAGAACAATTTGTGGAGCTTTACAGCATGCCAATTCTTGAAAATgtatgctaac ... ttcttttcagTTGCTCAAGGAGTTCCAGACATCATTCCCAACACTAG-AATTTCCTCCCTG
EST: TACTGAGAGAACAATTTGTGGAGCTTTACAGCATGCCAATTCTTGAAAAT TTGCTCAAGGAGTTCCAGACATCATTCCCAACACTAGAATTTCCTCCCTGTEST: gi|29682495|gb|CB678770.1|CB678770
genomic: TACTGAGAGAACAATTTGTGGAGCTTTACAGCATGCCAATTCTTGAAAATgtatgctaac ... ttcttttcagTTGCTCAAGGAGTTCCAGACATCATTCCCAACACTAGAATTTCCTCCCTGT
EST: TACTGAGAGAACAATTTGTGGAGCTTTACAGCATGCCAATTCTTGACCCT TTGCTCAAGGAGTTCCAGACATCATTCCCAACACTAGAATTTCCTCCCTGT
genomic: TACTGAGAGAACAATTTGTGGAGCTTTACAGCATGCCAATTCTTGAAAATgtatgctaac ... ttcttttcagTTGCTCAAGGAGTTCCAGACATCATTCCCAACACTAGAATTTCCTCCCTGT
gaggattacttcccctaacaatttatttcttttcaatttgaatgtttcttttcagTTGCTCAAGGAGTTCCAGACATCATTCCCAACACTAGAATTTCCTCCCTGTCCTTCACAAGGGGACTTCGATGTGAGAGAAGTTCTTGCTTCAACCTACT
ccctaac putative branch site (score: 16)
tgtttcttttc putative PPT
taacaatttatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctaacaggcactattcactcaacagtgtcttcattctacacttcactttaaactctacatgtgaggattacttcccctaacaatttatttcttttcaatttgaatgtttcttttcagTTGCTCAAGGAGTTCCAGACATCATTCCCAACACTAGAATTTCCTCCCTGTCCTTCACAAGGGGACTTCGATGTGAGAGAAGTTCTTGCTTCAACCTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT