1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ctgaattatttcacactgttaacaaacactaattttgcaaaagatgagtttactgcattcctccctttgcttattttttttgttatctaatttataccagATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAATTTTAAATTCTCTGAAGACTTTGTCCGTTGACCGTACCTCTATCTTTATT
species | Oryza sativa |
transcript | LOC_Os06g03770.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCT ATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAATEST: gi|218503707|gb|FG953305.1|FG953305
genomic: ACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCTgtaattccct ... tttataccagATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAAT
EST: AAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCT ATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAATEST: gi|86828024|gb|CI274925.1|CI274925
genomic: AAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCTgtaattccct ... tttataccagATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAAT
EST: AAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCT ATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAATEST: gi|38480897|gb|CF964986.1|CF964986
genomic: AAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCTgtaattccct ... tttataccagATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAAT
EST: AACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCGTGGCT ATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAAEST: gi|29670311|gb|CB666586.1|CB666586
genomic: AACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCAT-TCTgtaattccct ... tttataccagATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAA
EST: AAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCT ATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAATEST: gi|218481604|gb|FG953916.1|FG953916
genomic: AAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCTgtaattccct ... tttataccagATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAAT
EST: AAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCT ATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAATEST: gi|29646656|gb|CB651663.1|CB651663
genomic: AAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCTgtaattccct ... tttataccagATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAAT
EST: AAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCT ATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAAT
genomic: AAACAACGAGTATCAATTGCTCGTGTATTCTTGAAGGAACCTTCCATTCTgtaattccct ... tttataccagATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAAT
gagtttactgcattcctccctttgcttattttttttgttatctaatttataccagATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAATTTTAAATTCTCTGAAGACTTTGTCCGTTGACCGTACCTCTATCTTTATT
atctaat putative branch site (score: 15)
tttgcttatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaattatttcacactgttaacaaacactaattttgcaaaagatgagtttactgcattcctccctttgcttattttttttgttatctaatttataccagATTGTGTGATGAAGCTACAAGCGCTCTTGATAGCACCACCGAAGCGTCAATTTTAAATTCTCTGAAGACTTTGTCCGTTGACCGTACCTCTATCTTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - -ttcacac
- - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - -aaagatga
- - - - - - - - - - - - - - - - - - - - - - - - - tactgca