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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgagttatatctgtcaaagtatgagtaggatagtggagagttgctatccatgggcctttatagagttggactttacgatttctggatttgtttttgcagGTTTTTGCTGATCACAGTTCTAGCCACAATCCCATAAATATCCCAAGGGAGCAGTTATGGAACTTGCATAGGCGTATGGTTTACTTTGGGACTTCAGTGC

Basic information

species Oryza sativa
transcript LOC_Os05g37410.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g37410.1 (Oryza sativa), 3'ss of exon 18
lower sequence: GRMZM2G020977_T01 (Zea mays), 3'ss of exon 1
gtatgctgagttatatctgtcaaagtatgagtaggatagtggagagttgctatccatgggcctttatagagttggactttacgatttctggatttgtttttgcagGTTTTTGCTGATCACAGTTCTAGCCACAATCCCATAAATATCCCAAGGGAGCAGTTATGGAACTTGCATAGGCGTATGGTTTACTTTGGGACTTCAGTGC
|||  |  ||| || |||       ||    ||| |  |       |    | ||    | ||  || ||       |||  || |     || | |   | ||||| ||| || | ||||| || ||||| ||||| ||  || |   |||||||||||||||||||||||| ||  | ||||| | ||||||||||||||| |
gtaaacatagtgatgtctaatgtcttactcctagtactgc------tcctaagcctcttgtctcaatggacacactttttgtgactct---atctatccatacagGTATTTTCTAACCACAGGTCCAGCCATAATCCAATCCATGTGAAAAGGGAGCAGTTATGGAACTTGCAAAGATGCATGGTCTTCTTTGGGACTTCAGTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58677144|gb|CK065831.1|CK065831
EST:     CCATGAGAGGTAGTTTTCCACTTAATGGCACTTACTTTCAAGTTAATGAG                         GTTTTTGCTGATCACAGTTCTAGCCACAATCCCATAAATATCCCAAGGGAG
genomic: CCATGAGAGGTAGTTTTCCACTTAATGGCACTTACTTTCAAGTTAATGAGgtatgctgag ... gtttttgcagGTTTTTGCTGATCACAGTTCTAGCCACAATCCCATAAATATCCCAAGGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatccatgggcctttatagagttggactttacgatttctggatttgtttttgcagGTTTTTGCTGATCACAGTTCTAGCCACAATCCCATAAATATCCCAAGGGAGCAGTTATGGAACTTGCATAGGCGTATGGTTTACTTTGGGACTTCAGTGC
                                          tttgttttt  CT-rich tract
                                         atttgttttt  TA-rich tract