1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...tatcacgatatgcttgatgaagctttcttatattcattgcagcagatagggatatcatgtgcattattttgattgtttaaaatataaatgtgatatacagGTCAGCCATATTATGGACCCTATCGATGACTCAACTTTCAAAAATATCTGGATGGCCACTGCTAAG
species | Oryza sativa |
transcript | LOC_Os05g29050.2 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GCCTACGTCTCTCTCTCTGGGCAGAGCACCTTGGCCTTCATCGAGGAGAG GTCAGCCATATTATGGACCCTATCGATGACTCAACTTTCAAAAATATCTGGEST: gi|33797063|gb|CF324398.1|CF324398
genomic: GCCTACGTCTCTCTCTCTGGGCAGAGCACCTTGGCCTTCATCGAGGAGAGgtttgggata ... tgatatacagGTCAGCCATATTATGGACCCTATCGATGACTCAACTTTCAAAAATATCTGG
EST: GCCTACGTCTCTCTCTCTGGGCAGAGCACCTTGGCCTTCATCGAGGAGAG GTCAGCCATATTATGGACCCTATCGATGACTCAACTTTCAAAAEST: gi|88508982|gb|CI436488.1|CI436488
genomic: GCCTACGTCTCTCTCTCTGGGCAGAGCACCTTGGCCTTCATCGAGGAGAGgtttgggata ... tgatatacagGTCAGCCATATTATGGACCCTATCGATGACTCAACTTTCAAAA
EST: GCCTACGTCTCTCTCTCTGGGCAGAGCACCTTGGCCTTCATCGAGGAGAG GTCAGCCATATTATGGACCCTATCGATGACTCAACTTTCGAAAATATCTGGEST: gi|88488621|gb|CI425892.1|CI425892
genomic: GCCTACGTCTCTCTCTCTGGGCAGAGCACCTTGGCCTTCATCGAGGAGAGgtttgggata ... tgatatacagGTCAGCCATATTATGGACCCTATCGATGACTCAACTTTCAAAAATATCTGG
EST: TTGGCCTTCATCGAGGAGAG GTCAGCCATATTATGGACCCTATCGATGACTCAACTTTCAAAAATATCTGG
genomic: TTGGCCTTCATCGAGGAGAGgtttgggata ... tgatatacagGTCAGCCATATTATGGACCCTATCGATGACTCAACTTTCAAAAATATCTGG
atagggatatcatgtgcattattttgattgtttaaaatataaatgtgatatacagGTCAGCCATATTATGGACCCTATCGATGACTCAACTTTCAAAAATATCTGGATGGCCACTGCTAAG
ttttgat putative branch site (score: 5)
attattttgattgttt TA-rich tract