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...ccaggaaatcttatttactttgaaacaagagtacttgtgacttgtctatatgtttagcctatttaactctacttaactgacaagagctgtgcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAATGCATGGAACTTGTGGTCTAATGAATCGGTAGTCCCCAGAGCTGATGAGA
species | Oryza sativa |
transcript | LOC_Os05g27870.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GAAGTCTGTCAAG GATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAATEST: gi|88269746|gb|CI381044.1|CI381044
genomic: GAAGTCTGTCAAGgtacaattca ... gcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT
EST: ATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAAAAGTCTGTCAAG GATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAATEST: gi|15848676|gb|BI796952.1|BI796952
genomic: ATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAGAAGTCTGTCAAGgtacaattca ... gcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT
EST: ATCTGGCAAGAAGTCTGTCAAG GATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAATEST: gi|11025806|gb|AU162407.1|AU162407
genomic: ATCTGGCAAGAAGTCTGTCAAGgtacaattca ... gcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT
EST: ATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAGAAGTCTGTCAAG GATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT
genomic: ATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAGAAGTCTGTCAAGgtacaattca ... gcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT
ctatatgtttagcctatttaactctacttaactgacaagagctgtgcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAATGCATGGAACTTGTGGTCTAATGAATCGGTAGTCCCCAGAGCTGATGAGA
aactgac putative branch site (score: 16)
tatttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaggaaatcttatttactttgaaacaagagtacttgtgacttgtctatatgtttagcctatttaactctacttaactgacaagagctgtgcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAATGCATGGAACTTGTGGTCTAATGAATCGGTAGTCCCCAGAGCTGATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - -aacaaga
- - - - - - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - - - - -tgacttg