1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaaatgatcttgatttcgttctttgacactcttgacaatataacctgtccttttaacaatataacctgtcaaaagacactttaacagtgagcaatcaacattggatattcagatctaatatattccaattgcagGTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAGTCCCTTGGGAACCGACAGAGGAGATGTCCTTCATGTAGCTTGAGTTTTG
species | Oryza sativa |
transcript | LOC_Os04g46450.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AGTATAGGGGGATATTGAAGTGTGGTATCTGCCATGATAGGCAGAAGGAG GTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAGEST: gi|86437148|gb|CI118870.1|CI118870
genomic: AGTATAGGGGGATATTGAAGTGTGGTATCTGCCATGATAGGCAGAAGGAGgtaaatgatc ... ccaattgcagGTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAG
EST: AGTATAGGGGGATATTGAAGTGTGGTATCTGCCATGATAGGCAGAAGGAG GTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAGEST: gi|88584699|gb|CI702268.1|CI702268
genomic: AGTATAGGGGGATATTGAAGTGTGGTATCTGCCATGATAGGCAGAAGGAGgtaaatgatc ... ccaattgcagGTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAG
EST: AGTATAGGGGGATATTGAAGTGTGGTATCTGCCATGATAGGCAGAAGGAG GTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAGEST: gi|29679838|gb|CB676113.1|CB676113
genomic: AGTATAGGGGGATATTGAAGTGTGGTATCTGCCATGATAGGCAGAAGGAGgtaaatgatc ... ccaattgcagGTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAG
EST: AGTATAGGGGGATATTGAAGTGTGGTATCTGCCATGATAGGCAGAAGGAG GTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAGEST: gi|29640914|gb|CB645921.1|CB645921
genomic: AGTATAGGGGGATATTGAAGTGTGGTATCTGCCATGATAGGCAGAAGGAGgtaaatgatc ... ccaattgcagGTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAG
EST: AGTATAGGGGGATATTGAAGTGTGGTATCTGCCATGATAGGCAGAAGGAG GTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAGEST: gi|86480822|gb|CI123455.1|CI123455
genomic: AGTATAGGGGGATATTGAAGTGTGGTATCTGCCATGATAGGCAGAAGGAGgtaaatgatc ... ccaattgcagGTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAG
EST: GCCATGATAGGCAGAAGGAG GTTGTGATTACCAAGTGCTACCATCTCTTCGGCAATCAGTGCATACAGAAG
genomic: GCCATGATAGGCAGAAGGAGgtaaatgatc ... ccaattgcagGTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAG
tttaacagtgagcaatcaacattggatattcagatctaatatattccaattgcagGTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAGTCCCTTGGGAACCGACAGAGGAGATGTCCTTCATGTAGCTTGAGTTTTG
atctaat putative branch site (score: 4)
taatatattccaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgatcttgatttcgttctttgacactcttgacaatataacctgtccttttaacaatataacctgtcaaaagacactttaacagtgagcaatcaacattggatattcagatctaatatattccaattgcagGTTGTGATTACCAAGTGCTACCATCTCTTCTGCAATCAGTGCATACAGAAGTCCCTTGGGAACCGACAGAGGAGATGTCCTTCATGTAGCTTGAGTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG