1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtgcatgcgttgttctttgttttacttttgtgacaagcagttcaatcaaactgttaattttgagattacttttacagaaagggttgttctgaatgatgttatgctatgcagAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGG
species | Oryza sativa |
transcript | LOC_Os04g31190.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AACCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAG AGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGEST: gi|29668930|gb|CB665205.1|CB665205
genomic: AACCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAGgtgcatgcgt ... tgctatgcagAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAG
EST: AACCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAG AGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGEST: gi|33802600|gb|CF327172.1|CF327172
genomic: AACCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAGgtgcatgcgt ... tgctatgcagAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAG
EST: AACCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAG AGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGEST: gi|87039859|gb|CI194481.1|CI194481
genomic: AACCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAGgtgcatgcgt ... tgctatgcagAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAG
EST: GCATAATGTTTTAATCCGGAAACTGTACAG AGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGEST: gi|29668904|gb|CB665179.1|CB665179
genomic: GCATAATGTTTTAATCCGGAAACTGTACAGgtgcatgcgt ... tgctatgcagAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAG
EST: AACCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAG AGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAG
genomic: AACCACACAAAGCGTGAGCTGCATAATGTTTTAATCCGGAAACTGTACAGgtgcatgcgt ... tgctatgcagAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAG
attttgagattacttttacagaaagggttgttctgaatgatgttatgctatgcagAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGG
tgttaat putative branch site (score: 3)
attactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatgcgttgttctttgttttacttttgtgacaagcagttcaatcaaactgttaattttgagattacttttacagaaagggttgttctgaatgatgttatgctatgcagAGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA