1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...gttttccatagtttgtaacatagttactgtgagaagtaccattctcattttttgttgagtttaataataaactaacgaatcacatctcgctctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACACAG
species | Oryza sativa |
transcript | LOC_Os03g36780.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|89187096|gb|CI047163.1|CI047163
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACNATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|89164137|gb|CI101225.1|CI101225
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|87027719|gb|CI274283.1|CI274283
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|86434221|gb|CI094564.1|CI094564
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|29670886|gb|CB667161.1|CB667161
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|86849356|gb|CI297811.1|CI297811
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|89192591|gb|CI049889.1|CI049889
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|88965002|gb|CI097870.1|CI097870
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|88966342|gb|CI119477.1|CI119477
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|86255945|gb|CI068394.1|CI068394
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|87023356|gb|CI272184.1|CI272184
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACAEST: gi|58693580|gb|CK082267.1|CK082267
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
EST: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCAT GTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
genomic: TCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATgtatgtaaaa ... tctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACA
cattttttgttgagtttaataataaactaacgaatcacatctcgctctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACACAG
aactaac putative branch site (score: 13)
catctcgctctctttc putative PPT
tttgttgagtttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttccatagtttgtaacatagttactgtgagaagtaccattctcattttttgttgagtttaataataaactaacgaatcacatctcgctctctttcagGTTCCACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - gttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa