1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...tgactagcattcttgagattcttctgatccacatccaagtaccaactgctggtttttatctgtaagggtttccatagatcttatttgttttgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTTCAAATGCTGTTCATCTGCTCTGGAAATGGCCTCGCAATGACCGAAACT
species | Oryza sativa |
transcript | LOC_Os03g14980.2 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TATGAGGACAAGCAAG ATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTEST: gi|58658403|gb|CK047083.1|CK047083
genomic: TATGAGGACAAGCAAGgtgatatttt ... tgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCT
EST: CAAGTCAGTGCAGATCATTGAAATTAACAGATAATATGAGGACAAGCAAG ATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTEST: gi|88344056|gb|CI638791.1|CI638791
genomic: CAAGTCAGTGCAGATCATTGAAATTAACAGATAATATGAGGACAAGCAAGgtgatatttt ... tgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCT
EST: TATGAGGACAAGCAAG ATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTEST: gi|58691548|gb|CK080235.1|CK080235
genomic: TATGAGGACAAGCAAGgtgatatttt ... tgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCT
EST: CAAGTCAGTGCAGATCATTGAAATTAACAGATAATATGAGGACAAGCAAG ATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTEST: gi|58659010|gb|CK047690.1|CK047690
genomic: CAAGTCAGTGCAGATCATTGAAATTAACAGATAATATGAGGACAAGCAAGgtgatatttt ... tgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCT
EST: GAAGTCAGTGCAGATCATTGAAATTAACAGATAATATGAGGACAAGCAAG ATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTEST: gi|88573729|gb|CI665498.1|CI665498
genomic: CAAGTCAGTGCAGATCATTGAAATTAACAGATAATATGAGGACAAGCAAGgtgatatttt ... tgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCT
EST: TATGAGGACAAGCAAG ATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTEST: gi|163929555|gb|EG713486.1|EG713486
genomic: TATGAGGACAAGCAAGgtgatatttt ... tgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCT
EST: CAAGTCAGTGCAGATCATTGAAATTAACAGATAATATGAGGACAAGCAAG ATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTEST: gi|29673860|gb|CB670135.1|CB670135
genomic: CAAGTCAGTGCAGATCATTGAAATTAACAGATAATATGAGGACAAGCAAGgtgatatttt ... tgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCT
EST: CAAGTCAGTGCAGATCATTGAAATTAACAGATAATATGAGGACAAGCAAG ATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCT
genomic: CAAGTCAGTGCAGATCATTGAAATTAACAGATAATATGAGGACAAGCAAGgtgatatttt ... tgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCT
ctgctggtttttatctgtaagggtttccatagatcttatttgttttgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTTCAAATGCTGTTCATCTGCTCTGGAAATGGCCTCGCAATGACCGAAACT
tttgtttt CT-rich tract
atcttatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgactagcattcttgagattcttctgatccacatccaagtaccaactgctggtttttatctgtaagggtttccatagatcttatttgttttgaactgcagATTTCAAGACTTATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTTCAAATGCTGTTCATCTGCTCTGGAAATGGCCTCGCAATGACCGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -agcattc
- - - - - - - - - - - -ctgatcc
- - - - - - - - - - - - - - - -catccaa
- - - - - - - - - - - - - - - - - - - - - - actgctg