1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...cctgagtgtttaaccttaatgggtagtgtgcacaagtgttttttttcgtgagtctctctctctctctcttttctaacattgattctttttatttattcagATTGGATGGAAGGAATGGTTACAGAATATCTTGTCGCAACATTTGCTGATTATTTTGGGGATGTCAAACA
species | Oryza sativa |
transcript | LOC_Os02g51430.2 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TTTTGAAGACCCAGGTGTACAGGATCTACTAGTGAAAGTTTACCAAAAAG ATTGGATGGAAGGAATGGTTACCGAATATCTCGTCCCAACATTTGCTGATTEST: gi|88674057|gb|CI728170.1|CI728170
genomic: TTTTGAAGACCCAGGTGTACAGGATCTACTAGTGAAAGTTTACCAAAAAGgtaattcttt ... atttattcagATTGGATGGAAGGAATGGTTACAGAATATCTTGTCGCAACATTTGCTGATT
EST: TTTTGAAGACCCAGGTGTACAGGATCTACTACTGAAAG-TTACCAAAAAG ATTGGATGGAAGGAATGGTTACAGAATATCTTGTCGCAACATTTGCTGATTEST: gi|44670727|gb|CR284161.1|CR284161
genomic: TTTTGAAGACCCAGGTGTACAGGATCTACTAGTGAAAGTTTACCAAAAAGgtaattcttt ... atttattcagATTGGATGGAAGGAATGGTTACAGAATATCTTGTCGCAACATTTGCTGATT
EST: TTTTGAAGACCCAGGTGTACAGGATCTACTAGTGAAAGTTTACCAAAAAG ATTGGATGGAAGGAATGGTTACAGAATATCTTGTCGCAACATTTGCTGATT
genomic: TTTTGAAGACCCAGGTGTACAGGATCTACTAGTGAAAGTTTACCAAAAAGgtaattcttt ... atttattcagATTGGATGGAAGGAATGGTTACAGAATATCTTGTCGCAACATTTGCTGATT
tcgtgagtctctctctctctctcttttctaacattgattctttttatttattcagATTGGATGGAAGGAATGGTTACAGAATATCTTGTCGCAACATTTGCTGATTATTTTGGGGATGTCAAACA
ttctttttatttattc CT-rich tract
ttttctaacattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgagtgtttaaccttaatgggtagtgtgcacaagtgttttttttcgtgagtctctctctctctctcttttctaacattgattctttttatttattcagATTGGATGGAAGGAATGGTTACAGAATATCTTGTCGCAACATTTGCTGATTATTTTGGGGATGTCAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-ctgagtg
- - - - - - - - - - - - - - -gcacaag