1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtgattttaatttatctacttttcttctcaccatgaagttatctctctagtccccgactaacagttcaataaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGGTCCAGAAGCGTCATCACACAAGGCTGTTTGCTAATAACCACAAGGACC
species | Oryza sativa |
transcript | LOC_Os02g45070.2 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG GCATGTGCATCTTTGGAAGCCGATTATCEST: gi|218479705|gb|FG950878.1|FG950878
genomic: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATC
EST: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCNTGATGCCATTAGAAAG GCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGEST: gi|58673688|gb|CK062374.1|CK062374
genomic: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTG
EST: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG GCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGEST: gi|14571449|gb|BI118817.1|BI118817
genomic: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTG
EST: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG GCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGEST: gi|38469760|gb|CF953891.1|CF953891
genomic: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTG
EST: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG GCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGEST: gi|58681274|gb|CK069961.1|CK069961
genomic: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTG
EST: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG GCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGEST: gi|218488951|gb|FG960688.1|FG960688
genomic: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTG
EST: TTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG GCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGEST: gi|14571456|gb|BI118824.1|BI118824
genomic: TTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTG
EST: AGGACAAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG GCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGEST: gi|58599567|gb|CK010095.1|CK010095
genomic: AGGAC-AGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTG
EST: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG GCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGEST: gi|29657069|gb|CB653344.1|CB653344
genomic: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTG
EST: AGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG GCATGTGCATC-TTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGEST: gi|11544371|gb|BF475189.1|BF475189
genomic: AGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTG
EST: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAG GCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCCTTGTGGTGEST: gi|29626579|gb|CB631590.1|CB631590
genomic: AAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTG
EST: TCAGGTTCTGTTTTATGAGCTTGATGCCA-TAGAAAAG GCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGT
genomic: TCAGGTTCTGTTTTATGAGCTTGATGCCATTAG-AAAGgtgattttaa ... taaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGT
ttctcaccatgaagttatctctctagtccccgactaacagttcaataaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGGTCCAGAAGCGTCATCACACAAGGCTGTTTGCTAATAACCACAAGGACC
gactaac putative branch site (score: 35)
ttcaataaaaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattttaatttatctacttttcttctcaccatgaagttatctctctagtccccgactaacagttcaataaaaactagGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGGTCCAGAAGCGTCATCACACAAGGCTGTTTGCTAATAACCACAAGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT