1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gcacagatgattaatttatttatcacatttccaagaatgtttttgtctttgttcaaatgttgttaactatttgcttttcagGCAATTGCCATTGAGGCACAAAGTGAGTCCAAGTGGAGGCAGTTAGGAGAGTTAGCTATGTCAACCGGAAAG
species | Oryza sativa |
transcript | LOC_Os02g11830.2 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TTACAGATTTGACTTGCCCGTGGCA-CTTGGTCGCCTTGAAGTTGCAAAG GCAATTGCCATTGAGGCACAAAGTGAGTCCAAGTGGAGGEST: gi|58682583|gb|CK071270.1|CK071270
genomic: TTACAGATTTGACTTGGCCGTG-CAGCTTGGTCGGCTTGAAGTTGCAAAGgcacagatga ... tgcttttcagGCAATTGCCATTGAGGCACAAAGTGAGTCCAAGTGGAGG
EST: ATTACAGATTTGACTTGGCCGTGCAGCTTGGTCGGCTTGAAGTTGCAAAG GCAATTGCCATTGAGGCACAAAGTGAGTCCAAGTGGAGGCAGTTAGGAGAGEST: gi|58604527|gb|CK015055.1|CK015055
genomic: ATTACAGATTTGACTTGGCCGTGCAGCTTGGTCGGCTTGAAGTTGCAAAGgcacagatga ... tgcttttcagGCAATTGCCATTGAGGCACAAAGTGAGTCCAAGTGGAGGCAGTTAGGAGAG
EST: ATTACAGATTTGACTTGGCCGTGCAGCTTGGTCGGCTTGAAGTTGCAAAG GCAATTGCCATTGAGGCACAAAGTGAGTCCAAGTGGAGGCAGTTAGGAGAG
genomic: ATTACAGATTTGACTTGGCCGTGCAGCTTGGTCGGCTTGAAGTTGCAAAGgcacagatga ... tgcttttcagGCAATTGCCATTGAGGCACAAAGTGAGTCCAAGTGGAGGCAGTTAGGAGAG
atttccaagaatgtttttgtctttgttcaaatgttgttaactatttgcttttcagGCAATTGCCATTGAGGCACAAAGTGAGTCCAAGTGGAGGCAGTTAGGAGAGTTAGCTATGTCAACCGGAAAG
tgttaac putative branch site (score: 23)
tttgcttttc putative PPT
ttaactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacagatgattaatttatttatcacatttccaagaatgtttttgtctttgttcaaatgttgttaactatttgcttttcagGCAATTGCCATTGAGGCACAAAGTGAGTCCAAGTGGAGGCAGTTAGGAGAGTTAGCTATGTCAACCGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA