1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatgtttatctgtattggttaaacaatctaatgccatgtctaatttaatcttgaacttatgatagagtagcaaatctaactttagaacgagtacttaagaaaacttctctaactgcgcagGTATTACACTGTTCTTTTCGGAGTTTCAAGGAGCATTGGAATAGGATCTCAG
species | Oryza sativa |
transcript | LOC_Os02g10070.2 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GATGCTCACAGCGGAGTTCTACTGAACCACTTTGGATTATCTGAAGCTCG GTATTACACTGTTCTTTTCGGAGTTTCAAGGAGCATTGGAATAGGATCTCAEST: gi|87021334|gb|CI295393.1|CI295393
genomic: GATGCTCACAGCGGAGTTCTACTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttat ... aactgcgcagGTATTACACTGTTCTTTTCGGAGTTTCAAGGAGCATTGGAATAGGATCTCA
EST: GATGCTCACAGCGGAGTTCTACTGAACCACTTTGGATTATCTGAAGCTCG GTATTACACTGTTCTTTTCGGAGTTTCAAGGAGCATTGGAATAGGATCTCAEST: gi|58694362|gb|CK083049.1|CK083049
genomic: GATGCTCACAGCGGAGTTCTACTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttat ... aactgcgcagGTATTACACTGTTCTTTTCGGAGTTTCAAGGAGCATTGGAATAGGATCTCA
EST: GATGCTCACAGCGGAGTTCTACTGAACCACTTTGGATTATCTGAAGCTCG GTATTACACTGTTCTTTTCGGAGTTTCAAGGAGCATTGGAATAGGATCTCA
genomic: GATGCTCACAGCGGAGTTCTACTGAACCACTTTGGATTATCTGAAGCTCGgtatgtttat ... aactgcgcagGTATTACACTGTTCTTTTCGGAGTTTCAAGGAGCATTGGAATAGGATCTCA
agtagcaaatctaactttagaacgagtacttaagaaaacttctctaactgcgcagGTATTACACTGTTCTTTTCGGAGTTTCAAGGAGCATTGGAATAGGATCTCAG
ctctaac putative branch site (score: 2)
cttctcta CT-rich tract
ttaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttatctgtattggttaaacaatctaatgccatgtctaatttaatcttgaacttatgatagagtagcaaatctaactttagaacgagtacttaagaaaacttctctaactgcgcagGTATTACACTGTTCTTTTCGGAGTTTCAAGGAGCATTGGAATAGGATCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA