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gtacgcatttctaccctattttcaagtttctaacactcgctgtgtagattgcaatatgaccaatggtatttgttgcttgtcacagGTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAAATTTCAGAAGCTGTACGATGACCTTACCGCCGGGTTCCGCAATCTAGAA
species | Oryza sativa |
transcript | LOC_Os02g07870.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGT GTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAAEST: gi|89198392|gb|CI007452.1|CI007452
genomic: ACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGTgtacgcattt ... cttgtcacagGTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAA
EST: ACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGT GTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAAEST: gi|88962225|gb|CI097378.1|CI097378
genomic: ACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGTgtacgcattt ... cttgtcacagGTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAA
EST: ACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGT GTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAAEST: gi|88956459|gb|CI092711.1|CI092711
genomic: ACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGTgtacgcattt ... cttgtcacagGTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAA
EST: ACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGT GTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAA
genomic: ACATACAGTGTCATAAAGCATCGCATGGGCGATCTATTCTACCGCCTAGTgtacgcattt ... cttgtcacagGTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAA
taacactcgctgtgtagattgcaatatgaccaatggtatttgttgcttgtcacagGTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAAATTTCAGAAGCTGTACGATGACCTTACCGCCGGGTTCCGCAATCTAGAA
ttctaac putative branch site (score: 19)
tatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcatttctaccctattttcaagtttctaacactcgctgtgtagattgcaatatgaccaatggtatttgttgcttgtcacagGTCGCAAAAATTCGAGGATCCCGCAGAGGGCAAAGAAGTTTTGATTGCGAAATTTCAGAAGCTGTACGATGACCTTACCGCCGGGTTCCGCAATCTAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG