1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tttattattttggactctgtttgatgccccctttacatatttcttcagtgttctttttgtaactcattgttgttgagaaatggcccctcatgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAATTATTACAAGAGCTCAGGTCGTTGGATGTGAAGACAGAGAAATAGCAAA
species | Oryza sativa |
transcript | LOC_Os01g36840.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG GAACCAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAAEST: gi|88850945|gb|CI096335.1|CI096335
genomic: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAGgtattttatc ... tgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
EST: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG GAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAAEST: gi|116875003|gb|EC365511.1|EC365511
genomic: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAGgtattttatc ... tgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
EST: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG GAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAAEST: gi|86437853|gb|CI119773.1|CI119773
genomic: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAGgtattttatc ... tgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
EST: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG GAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAAEST: gi|116874995|gb|EC365503.1|EC365503
genomic: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAGgtattttatc ... tgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
EST: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG GAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAAEST: gi|86257213|gb|CI004031.1|CI004031
genomic: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAGgtattttatc ... tgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
EST: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG GAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAAEST: gi|33793365|gb|CF322564.1|CF322564
genomic: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAGgtattttatc ... tgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
EST: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG GAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAAEST: gi|116875534|gb|EC366042.1|EC366042
genomic: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAGgtattttatc ... tgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
EST: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG GAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAAEST: gi|86901270|gb|CI326113.1|CI326113
genomic: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAGgtattttatc ... tgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
EST: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG GAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAAEST: gi|88831097|gb|CI080521.1|CI080521
genomic: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAGgtattttatc ... tgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
EST: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAG GAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
genomic: ATGCTTGCAATACGAGGAGTCAGCAAAACAACTTGCTCTGAAGgtattttatc ... tgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAA
cagtgttctttttgtaactcattgttgttgagaaatggcccctcatgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAATTATTACAAGAGCTCAGGTCGTTGGATGTGAAGACAGAGAAATAGCAAA
ttgtaac putative branch site (score: 2)
cccctcatgttcttt putative PPT
tttttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattattttggactctgtttgatgccccctttacatatttcttcagtgttctttttgtaactcattgttgttgagaaatggcccctcatgttctttagGAACAAAAGCTCCGATCTCAAATTGCTTTGGAAAGAAAGAAATATGAGGAATTATTACAAGAGCTCAGGTCGTTGGATGTGAAGACAGAGAAATAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA