Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaacaaagagcaaagtgtgtttagttcatatgtttacatctctggaataatagtggttgtgtgtttgtaacatcgtcttgtacatcaatttgttacagGAGTGGAGTGTATATGTAATAACAGGGTTCGGTTAACCATTCTGTTACATGAACTGATACAGATTTGTAATTTGGCTGAGATTTTGTGTGCAGTTGATGA

Basic information

species Oryza sativa
transcript LOC_Os12g35350.2
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86600403|gb|CI356160.1|CI356160
EST:     AGATGGAAGGAAGAGCGGGAACGCCAAAGAACCCTCCTGTTTAATCCATA                         GACTGGAGTGTATATGTAATAACAGGGTTCGGTTAACCATTCTGTTACATG
genomic: AGATGGAAGGAAGAGCGGGAACGCCAAAGAACCCTCCTGTTTAATCCATAgtaagcaaca ... tttgttacagGAGTGGAGTGTATATGTAATAACAGGGTTCGGTTAACCATTCTGTTACATG
EST: gi|88275907|gb|CI396511.1|CI396511
EST:     AGATGGAAGGAAGAGCGGGAACGCCAAAGAACCCTCCTGTTTAATCCATA                         GAGTGGAGCGTATATGTAATAACAGGGTTCGGTTAACCATTCTGTTACATG
genomic: AGATGGAAGGAAGAGCGGGAACGCCAAAGAACCCTCCTGTTTAATCCATAgtaagcaaca ... tttgttacagGAGTGGAGTGTATATGTAATAACAGGGTTCGGTTAACCATTCTGTTACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaataatagtggttgtgtgtttgtaacatcgtcttgtacatcaatttgttacagGAGTGGAGTGTATATGTAATAACAGGGTTCGGTTAACCATTCTGTTACATGAACTGATACAGATTTGTAATTTGGCTGAGATTTTGTGTGCAGTTGATGA
                     ttgtaac  putative branch site (score: 2)
                                           aatttgtta  TA-rich tract