1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgatgcttcatttcttatctttgatagggatcatccagaaagatgcatcctgcattcttgttgcagttgctcttacttatttttcattccgtgggcattgccacagCAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCAGAAGCTTCAGTGGAATCAGCTGGTGCAAAAGCTGCTGCATGCAGAACTC
species | Oryza sativa |
transcript | LOC_Os12g20150.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAAATGTCTAAG CAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCAEST: gi|29669192|gb|CB665467.1|CB665467
genomic: ATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAAATGTCTAAGgtgatgcttc ... attgccacagCAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCA
EST: ATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAAATGTCTAAG CAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCAEST: gi|29666723|gb|CB662998.1|CB662998
genomic: ATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAAATGTCTAAGgtgatgcttc ... attgccacagCAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCA
EST: ATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAAATGTCTAAG CAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCAEST: gi|218500377|gb|FG965723.1|FG965723
genomic: ATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAAATGTCTAAGgtgatgcttc ... attgccacagCAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCA
EST: ATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAAATGTCTAAG CAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCAEST: gi|58652693|gb|CK041373.1|CK041373
genomic: ATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAAATGTCTAAGgtgatgcttc ... attgccacagCAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCA
EST: ATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAAATGTCTAAG CAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCA
genomic: ATGAATTCTCTCTACCATCGGATATCGAGATGCCACTGCAAATGTCTAAGgtgatgcttc ... attgccacagCAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCA
gcattcttgttgcagttgctcttacttatttttcattccgtgggcattgccacagCAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCAGAAGCTTCAGTGGAATCAGCTGGTGCAAAAGCTGCTGCATGCAGAACTC
ctcttac putative branch site (score: 3)
ttacttatttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgcttcatttcttatctttgatagggatcatccagaaagatgcatcctgcattcttgttgcagttgctcttacttatttttcattccgtgggcattgccacagCAAAAAAGCAAATCAGGAGTGAATGGTAGTTTTGCTGCTCTTGAGCTTTCAGAAGCTTCAGTGGAATCAGCTGGTGCAAAAGCTGCTGCATGCAGAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC