1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...tgagtgtatggtgctaattttatgctgtacttttatactctatgcgatgtttaaatgacatggaaagtacataccataaataatctgagctttgccttagGGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAG
species | Oryza sativa |
transcript | LOC_Os12g13590.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AAGGTCTCAATAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTEST: gi|87029720|gb|CI274401.1|CI274401
genomic: AAGGTCTCAATAAACAGTCCTTTTTGACTGAGCTGgtatgtaaat ... tttgccttagGGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTT
EST: AGTGCTCTAGAAGGTCTCAATAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTEST: gi|66920327|gb|CX107175.1|CX107175
genomic: AGTGCTCTAGAAGGTCTCAATAAACAGTCCTTTTTGACTGAGCTGgtatgtaaat ... tttgccttagGGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTT
EST: CATTCAGTGCTCTAGAAGGTCTCAATAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTEST: gi|33689213|gb|CF317452.1|CF317452
genomic: CATTCAGTGCTCTAGAAGGTCTCAATAAACAGTCCTTTTTGACTGAGCTGgtatgtaaat ... tttgccttagGGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTT
EST: CAATAAACAGTCCTTTTTGACTGAGCTG GGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTT
genomic: CAATAAACAGTCCTTTTTGACTGAGCTGgtatgtaaat ... tttgccttagGGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTT
gatgtttaaatgacatggaaagtacataccataaataatctgagctttgccttagGGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAG
ctttgcctt CT-rich tract
ataccataaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtgtatggtgctaattttatgctgtacttttatactctatgcgatgtttaaatgacatggaaagtacataccataaataatctgagctttgccttagGGAAATCGCTTGCATAAGGGGCTACTCAATCATTGGCAGAAGTTCACATTTAGTCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT