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gtaagcaaacatttctgatttcttactggatgtaatgcacatatcaatgtctagtagagtttgtggttttggtcatctgaagccaaagctttgctcatgataaccaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCACGCTTGCTCCTCACTCTTTCTCCTCATTCGATCTTGCGCTTGCCCAGT
species | Oryza sativa |
transcript | LOC_Os12g03470.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTTTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|29627660|gb|CB632671.1|CB632671
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|86886795|gb|CI334709.1|CI334709
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|86864008|gb|CI332931.1|CI332931
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTTTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|86871078|gb|CI328280.1|CI328280
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|88275188|gb|CI395792.1|CI395792
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|88991325|gb|CI034660.1|CI034660
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAAT-TGATGGATGAGAACTCTTTTAGT-ACCCG-ATAAG GTTGTTCCTGTC-AAAGCCAGCTTTCCGATGCAGCAGAGCAGATGCAAGTCEST: gi|86908591|gb|CI318942.1|CI318942
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATTTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|15852244|gb|BI805040.1|BI805040
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCACAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTEST: gi|86895695|gb|CI315979.1|CI315979
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCA-AAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGT
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|88970064|gb|CI383566.1|CI383566
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|86853141|gb|CI324843.1|CI324843
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCACCAGAGCAGATGTAAGTCEST: gi|29667818|gb|CB664093.1|CB664093
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|88443457|gb|CI552200.1|CI552200
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGGAGCAGAGCAGATGCAAGTCEST: gi|88431841|gb|CI560086.1|CI560086
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|86840456|gb|CI333774.1|CI333774
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATTTGATGGATGAGAACTCTTTTATTAACCCGAATAAG TTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|86882978|gb|CI314236.1|CI314236
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|86852655|gb|CI321775.1|CI321775
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCEST: gi|86839190|gb|CI331473.1|CI331473
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
agtttgtggttttggtcatctgaagccaaagctttgctcatgataaccaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCACGCTTGCTCCTCACTCTTTCTCCTCATTCGATCTTGCGCTTGCCCAGT
tgataac putative branch site (score: 2)
atgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaacatttctgatttcttactggatgtaatgcacatatcaatgtctagtagagtttgtggttttggtcatctgaagccaaagctttgctcatgataaccaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCACGCTTGCTCCTCACTCTTTCTCCTCATTCGATCTTGCGCTTGCCCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC