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gtaacgtaactagctatatcctgctgctatacatgagtgtttaatttggatgatgagatcctaatgtagaatgtgtgtgtgtgaatgaaatcaataatgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGAAGGGACTAGTAACAAATAACCGCACGGATATGTTCTGAAGACCCTGAT
species | Oryza sativa |
transcript | LOC_Os12g01140.5 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|58612523|gb|CK040235.1|CK040235
genomic: TTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86867220|gb|CI337758.1|CI337758
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: CTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88276645|gb|CI397447.1|CI397447
genomic: CTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: CTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88477917|gb|CI415188.1|CI415188
genomic: CTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86482520|gb|CI125153.1|CI125153
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86889831|gb|CI333482.1|CI333482
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: GTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88278005|gb|CI398807.1|CI398807
genomic: GTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCGTATACGCGCCACG GCGCCTCCAAAGGTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86833711|gb|CI337285.1|CI337285
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: TATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88476858|gb|CI414129.1|CI414129
genomic: TATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: GACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88465516|gb|CI522267.1|CI522267
genomic: GACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: CCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86886447|gb|CI322679.1|CI322679
genomic: CCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88902162|gb|CI374770.1|CI374770
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88376071|gb|CI530575.1|CI530575
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: TACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|89190812|gb|CI392665.1|CI392665
genomic: TACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88485466|gb|CI422737.1|CI422737
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86911449|gb|CI317660.1|CI317660
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCCTGGTATAAATTGGCCTCTTATACGCCCCACG GCCCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86889185|gb|CI315796.1|CI315796
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86860880|gb|CI326477.1|CI326477
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AA-GACATCCCTTTGTCCGT-GTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88252118|gb|CI350546.1|CI350546
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88280630|gb|CI401828.1|CI401828
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCNCG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86878327|gb|CI319589.1|CI319589
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88513674|gb|CI441180.1|CI441180
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86481030|gb|CI123663.1|CI123663
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88482164|gb|CI419435.1|CI419435
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|33680725|gb|CF308964.1|CF308964
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACGTGGAGAAGEST: gi|86875912|gb|CI325499.1|CI325499
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|86893491|gb|CI313505.1|CI313505
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGEST: gi|88279055|gb|CI400055.1|CI400055
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
atgagatcctaatgtagaatgtgtgtgtgtgaatgaaatcaataatgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGAAGGGACTAGTAACAAATAACCGCACGGATATGTTCTGAAGACCCTGAT
tcctaat putative branch site (score: 2)
aatgaaatcaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgtaactagctatatcctgctgctatacatgagtgtttaatttggatgatgagatcctaatgtagaatgtgtgtgtgtgaatgaaatcaataatgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAGAAGGGACTAGTAACAAATAACCGCACGGATATGTTCTGAAGACCCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA