1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtagtgtttagtctagaatcatcctattattttcatttcctgaaattgggctatatgttctcatgctgtgcaaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGAGAAACCCTAAAAGGTTCCTAGAAGGGCTGCTAGATCAGTATGTCTCAT
species | Oryza sativa |
transcript | LOC_Os10g42439.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGEST: gi|88361783|gb|CI680358.1|CI680358
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGEST: gi|88590336|gb|CI709182.1|CI709182
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGEST: gi|88444728|gb|CI694966.1|CI694966
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGEST: gi|58671255|gb|CK059941.1|CK059941
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGEST: gi|88581389|gb|CI698370.1|CI698370
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGEST: gi|88588295|gb|CI706103.1|CI706103
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGEST: gi|218488686|gb|FG961338.1|FG961338
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGEST: gi|88580858|gb|CI697815.1|CI697815
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGEST: gi|58664326|gb|CK053012.1|CK053012
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGEST: gi|29638584|gb|CB643593.1|CB643593
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
EST: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAG GTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
genomic: ATGTGCCTGAACAAGCATCTGGCCAGCATGTAATGAAGGATGAGCCACAGgtagtgttta ... caaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTG
attattttcatttcctgaaattgggctatatgttctcatgctgtgcaaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGAGAAACCCTAAAAGGTTCCTAGAAGGGCTGCTAGATCAGTATGTCTCAT
tttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgtttagtctagaatcatcctattattttcatttcctgaaattgggctatatgttctcatgctgtgcaaatttcagGTTGGAGGTATTTATGTGAGACTCTTCCTAAAGGATCCCAAGTTTCCATTGAGAAACCCTAAAAGGTTCCTAGAAGGGCTGCTAGATCAGTATGTCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA