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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaccgaacttattttaaatctccagataattgtttggttagaaatattcattcatctgaatattttccaggccactaacaagagttcatgtccagGATTTCGTTTCGTCTTGGCCTCGACGTTCTGATTGGTTGACATGTAGCGTTTTAGGTGCGAGATTCGTAATGTGATTCTTTTTTTTTCACACGCTAAATC

Basic information

species Oryza sativa
transcript LOC_Os10g34750.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8857707|gb|AU095025.1|AU095025
EST:     TACCATGCGAACAACAATAACGATGATGAGGATGATGACTAGACTATGAG                         GATTTCGTTTCGTCTTGGCCTCGACGTTCTGATTGGTTGACATGTAGCGTT
genomic: TACCATGCGAACAACAATAACGATGATGAGGATGATGACTAGACTATGAGgtaaacaccg ... tcatgtccagGATTTCGTTTCGTCTTGGCCTCGACGTTCTGATTGGTTGACATGTAGCGTT
EST: gi|29629335|gb|CB634346.1|CB634346
EST:     TACCATGCGAACAACAATAACGATGATGAGGATGATGACTAGACTATGAG                         GATTTCGTTTCGTCTTGGCCTCGACGTTTTGATTGGTTGACATGTAGCGTT
genomic: TACCATGCGAACAACAATAACGATGATGAGGATGATGACTAGACTATGAGgtaaacaccg ... tcatgtccagGATTTCGTTTCGTCTTGGCCTCGACGTTCTGATTGGTTGACATGTAGCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatattcattcatctgaatattttccaggccactaacaagagttcatgtccagGATTTCGTTTCGTCTTGGCCTCGACGTTCTGATTGGTTGACATGTAGCGTTTTAGGTGCGAGATTCGTAATGTGATTCTTTTTTTTTCACACGCTAAATC
                                cactaac  putative branch site (score: 1)
                tgaatatttt  TA-rich tract