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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctcaagttcatggttctgtgctttagttctttacattaaattgttgatcaaacatgggtgatacactgaagcacccacctcatcccttgtgcttatttcggtttttgatctgaaatttttcacccatttaacgttacttttggctcttgcgggttcttacaagttgtttgccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAAGGAAGAGAAGGAGGCGCCAGCGATGGGAGGCATGGGTGGAATGGATTAC

Basic information

species Oryza sativa
transcript LOC_Os10g32550.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g32550.1 (Oryza sativa), 3'ss of exon 17
lower sequence: GRMZM2G416120_T01 (Zea mays), 3'ss of exon 16
gtaagctctcaagttcatggttctgtgctttagttctttacattaaattgttgatcaaacatgggtgatacactgaagcacccacctcatcccttgtgcttatttcggtttt-tgatctgaaatttttcacccattt-aacgttacttttggctcttgcgggttcttacaagttgtttgccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAAGGAAGAGAAGGAGGCGCCAGCGATGGGAGGCATGGGTGGAATGGATTAC
                                                                                      |  ||   ||  || | || | |  | ||| ||     | |   |   ||| || | |  | ||  |    |   |  || ||    | ||  | || ||||| || || || |||||||| |||||||||||||| || ||||||||||| |||||||||     ||| ||||| ||||| |||||||||||||||||||||
--------------------------------------------------------------------------------------ttgtcttatgacctaaatttgttactgtgaactaccgctctctgctttttttaatgctggtgttaaca--aggttgccctcactcact-ttcacattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAGGAAGAGGCACCGGCTCCAGCAATGGGTGGCATGGGTGGAATGGATTAC

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 3'ss of exon 17
lower sequence: GRMZM2G111477_T02 (Zea mays), 3'ss of exon 4
gtaagctctcaagttcatggttctgtgctttagttctttacattaaattgttgatcaaacatgggtgatacactgaagcacccacctcatcccttgtgcttatttcggttt-ttgatctgaaatttttcaccca--tttaacgttacttttggctcttg-cgggttcttacaagttgtttgcct---tctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAAGGAAGAGAAGGAGGCGCCAGCGATGGGAGGC---ATGGGTGGAATGGATTAC
                                                                                              ||   |     |||||| || | |||   ||  | | | |  | |  |   ||||  |  | ||| |||||  | ||||||| |    ||   | ||||| || || || ||||||||||||||||||||||| || |||||||| || |||||||||     ||| ||||| ||||| |||   |||||||| ||||||   
----------------------------------------------------------------------------------------------tgaattggcaacggtttgtttagctgctcttcatgagctaaatctgtcaggacttaggtattttggcgggtgttaacaagttttccctctcattttgcagTGTGTCGTCCCTGATGACAACCACGGAATCCATAATTGTAGAGATTCCCAAGGAAGAGGCACCGGCTCCAGCAATGGGTGGCGGCATGGGTGGCATGGAT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86425601|gb|CI070698.1|CI070698
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89189436|gb|CI048975.1|CI048975
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88830728|gb|CI078172.1|CI078172
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88989058|gb|CI042171.1|CI042171
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|287010|gb|D15815.1|D15815
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         GGTAATCATCTCTGATGACAACCACGG
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTA-TCATCTCTGATGACAACCACGG
EST: gi|88455830|gb|CI524249.1|CI524249
EST:     AACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: AACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89186127|gb|CI047996.1|CI047996
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86429482|gb|CI076163.1|CI076163
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88907186|gb|CI089980.1|CI089980
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCNATCATCGTGGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88273702|gb|CI394108.1|CI394108
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|12405235|gb|AU166836.1|AU166836
EST:     CCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: CCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86495221|gb|CI137854.1|CI137854
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89180891|gb|CI044974.1|CI044974
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88328307|gb|CI651318.1|CI651318
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGAT
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGAT
EST: gi|86429208|gb|CI075889.1|CI075889
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAC
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|29632104|gb|CB637113.1|CB637113
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86428867|gb|CI075548.1|CI075548
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88964571|gb|CI069919.1|CI069919
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|58596546|gb|CK007074.1|CK007074
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|218483700|gb|FG965930.1|FG965930
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGT
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGT
EST: gi|27577977|gb|CB000672.1|CB000672
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86431980|gb|CI085591.1|CI085591
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|58654346|gb|CK043026.1|CK043026
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89178963|gb|CI043468.1|CI043468
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89180903|gb|CI044986.1|CI044986
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89188889|gb|CI048625.1|CI048625
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88833590|gb|CI077071.1|CI077071
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|94362407|gb|CI052402.1|CI052402
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88376645|gb|CI537949.1|CI537949
EST:     GAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: GAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89182930|gb|CI045688.1|CI045688
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|27546502|gb|CA764746.2|CA764746
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTAGTGGATGCTGCAAG                         CGTATCATCTCTGATGACNACCACGGNATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88907448|gb|CI090242.1|CI090242
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86859495|gb|CI278890.1|CI278890
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|87029223|gb|CI276491.1|CI276491
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTGGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88429865|gb|CI562676.1|CI562676
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88248193|gb|CI248042.1|CI248042
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88269501|gb|CI380799.1|CI380799
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88222020|gb|CI221976.1|CI221976
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|58686259|gb|CK074946.1|CK074946
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86491986|gb|CI134619.1|CI134619
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|163927982|gb|EG712958.1|EG712958
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTG
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTG
EST: gi|86432217|gb|CI085828.1|CI085828
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88455741|gb|CI524160.1|CI524160
EST:     ATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86425146|gb|CI070243.1|CI070243
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88466392|gb|CI529801.1|CI529801
EST:     TTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: TTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86503371|gb|CI146004.1|CI146004
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|163928905|gb|EG709758.1|EG709758
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86492527|gb|CI135160.1|CI135160
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88249312|gb|CI249161.1|CI249161
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89177209|gb|CI043712.1|CI043712
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCCAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|218501741|gb|FG957158.1|FG957158
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88907326|gb|CI090120.1|CI090120
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|58678370|gb|CK067057.1|CK067057
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88243106|gb|CI244228.1|CI244228
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|25803762|gb|CA759723.1|CA759723
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89179935|gb|CI044214.1|CI044214
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88955616|gb|CI091905.1|CI091905
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86484354|gb|CI126987.1|CI126987
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89176211|gb|CI043232.1|CI043232
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCCAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88295021|gb|CI522975.1|CI522975
EST:     AAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: AAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86432702|gb|CI086313.1|CI086313
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89189803|gb|CI049342.1|CI049342
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCCAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89173683|gb|CI041576.1|CI041576
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86493424|gb|CI136057.1|CI136057
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88834414|gb|CI077697.1|CI077697
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|89187757|gb|CI115203.1|CI115203
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88487530|gb|CI424801.1|CI424801
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88295722|gb|CI532683.1|CI532683
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88908113|gb|CI090709.1|CI090709
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|58594648|gb|CF992956.1|CF992956
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCGCGGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88276740|gb|CI397542.1|CI397542
EST:     AACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: AACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|88961686|gb|CI096902.1|CI096902
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86428036|gb|CI073133.1|CI073133
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
EST: gi|86426191|gb|CI071288.1|CI071288
EST:     ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG                         CGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA
genomic: ATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 68

GTGAATATGTGGACATGGTGAAGGCTGGTATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGgtaagctctc ... ccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAAGGAAGAGAAGGAGGCGCCAGCGATGGGAGGCATGGGTGGAATGGATTAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaacgttacttttggctcttgcgggttcttacaagttgtttgccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAAGGAAGAGAAGGAGGCGCCAGCGATGGGAGGCATGGGTGGAATGGATTAC
                            ttcttac  putative branch site (score: 68)
                                         tttgccttct  putative PPT
        ttactttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagctctcaagttcatggttctgtgctttagttctttacattaaattgttgatcaaacatgggtgatacactgaagcacccacctcatcccttgtgcttatttcggtttttgatctgaaatttttcacccatttaacgttacttttggctcttgcgggttcttacaagttgtttgccttctgcagCGTATCATCTCTGATGACAACCACGGAATCCATCATCGTAGAGATCCCAAAGGAAGAGAAGGAGGCGCCAGCGATGGGAGGCATGGGTGGAATGGATTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA