1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...gtcagctgtcttgcaaatgtaacatgcaacctacaccgtctgtttttagccatttttctgtttatatactattatactcattcttgagtactgttctcagGAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATAAGGAATTATTGTGACGTGACACTGATGTCGCTGGCATATGCTGGGACAG
species | Oryza sativa |
transcript | LOC_Os09g15750.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG GAAAGTGTGGAGGCGACCGCTGAGGTTTEST: gi|86901593|gb|CI310355.1|CI310355
genomic: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgac ... ctgttctcagGAAAGTGTGGAGGCGACCGCTGAGGTTT
EST: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG GAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATAEST: gi|88333926|gb|CI645340.1|CI645340
genomic: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgac ... ctgttctcagGAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATA
EST: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG GAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAAEST: gi|88353739|gb|CI634530.1|CI634530
genomic: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgac ... ctgttctcagGAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAA
EST: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG GAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATAEST: gi|88342006|gb|CI644343.1|CI644343
genomic: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgac ... ctgttctcagGAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATA
EST: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG GAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGEST: gi|88340773|gb|CI636933.1|CI636933
genomic: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgac ... ctgttctcagGAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAG
EST: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG GAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGAEST: gi|29644400|gb|CB649407.1|CB649407
genomic: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgac ... ctgttctcagGAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGA
EST: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG GAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATA
genomic: TTATACGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgac ... ctgttctcagGAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATA
ttagccatttttctgtttatatactattatactcattcttgagtactgttctcagGAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATAAGGAATTATTGTGACGTGACACTGATGTCGCTGGCATATGCTGGGACAG
ctgttctc CT-rich tract
atttttctgtttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagctgtcttgcaaatgtaacatgcaacctacaccgtctgtttttagccatttttctgtttatatactattatactcattcttgagtactgttctcagGAAAGTGTGGAGGCGACCGCTGAGGTTTCTAAAACCTTTGATGAGAAGATAAGGAATTATTGTGACGTGACACTGATGTCGCTGGCATATGCTGGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-tcagctg
- - - - tcttgca
- - - - - - - - - - -acatgca
- - - - - - - - - - - - - - -cctacac
- - - - - - - - - - - - - - - - - - - tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcttg