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gtataattgttgtcatctatctctaacatcgttatcatatacacaacatatccatatgttgatgctgttttcataacttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATATCTCGAAGCATGGAAGTATGGAGCTGGCTTAGATTATCGCCAAGGGGAA
species | Oryza sativa |
transcript | LOC_Os08g32630.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|86883509|gb|CI338064.1|CI338064
genomic: GACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTT-AATCCTGGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|88270992|gb|CI386847.1|CI386847
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|29642655|gb|CB647662.1|CB647662
genomic: ATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|22306918|gb|BQ908140.1|BQ908140
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: GCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCC-ATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|88473610|gb|CI410881.1|CI410881
genomic: GCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|86826477|gb|CI364110.1|CI364110
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTCCCATTGAGGAACAAAATATCAATTGAAACGAT
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAAC-AAATATCAATGGAAACGAT
gttatcatatacacaacatatccatatgttgatgctgttttcataacttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATATCTCGAAGCATGGAAGTATGGAGCTGGCTTAGATTATCGCCAAGGGGAA
tcataac putative branch site (score: 2)
ctttt CT-rich tract
ttttcataactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataattgttgtcatctatctctaacatcgttatcatatacacaacatatccatatgttgatgctgttttcataacttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATATCTCGAAGCATGGAAGTATGGAGCTGGCTTAGATTATCGCCAAGGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT