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gtataattgttgtcatctatctctaacatcgttatcatatacacaacatatccatatgttgatgctgttttcataacttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATATCTCGAAGCATGGAAGTATGGAGCTGGCTTAGATTATCGCCAAGGGGAA
species | Oryza sativa |
transcript | LOC_Os08g32630.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|86883509|gb|CI338064.1|CI338064
genomic: GACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTT-AATCCTGGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|29670151|gb|CB666426.1|CB666426
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|88270992|gb|CI386847.1|CI386847
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|22305644|gb|BQ906866.1|BQ906866
genomic: ATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCNATCCTCAG GCCTTGGGTTGAATCCTTGCCACTTGAGGAACAAATATCAATGGAAACGATEST: gi|29677474|gb|CB673749.1|CB673749
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCA-TTGAGGAACAAATATCAATGGAAACGAT
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|88244952|gb|CI244801.1|CI244801
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAGCAAATATCAATGGAAACGATAEST: gi|88847633|gb|CI018324.1|CI018324
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|22306918|gb|BQ908140.1|BQ908140
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: GCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCC-ATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|88245161|gb|CI245010.1|CI245010
genomic: GCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAGCAAATATCAATGGAAACGATAEST: gi|88841109|gb|CI001071.1|CI001071
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|88473610|gb|CI410881.1|CI410881
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATAEST: gi|86826477|gb|CI364110.1|CI364110
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTCCCATTGAGGAACAAAATATCAATTGAAACGATEST: gi|29679962|gb|CB676237.1|CB676237
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAAC-AAATATCAATGGAAACGAT
EST: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
gttatcatatacacaacatatccatatgttgatgctgttttcataacttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATATCTCGAAGCATGGAAGTATGGAGCTGGCTTAGATTATCGCCAAGGGGAA
tcataac putative branch site (score: 2)
ctttt CT-rich tract
ttttcataactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataattgttgtcatctatctctaacatcgttatcatatacacaacatatccatatgttgatgctgttttcataacttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATATCTCGAAGCATGGAAGTATGGAGCTGGCTTAGATTATCGCCAAGGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT