1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...gcatatgtaacatgcaacctcttcatgaacctacaccgtctgtttttagccagttttatgttaatatactattatactcattcttgactactgttctcagGAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATAAGGAATTATTGTGACGTGACATTGATGTCACTGGCATATGCTGGGACAG
species | Oryza sativa |
transcript | LOC_Os06g48640.3 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG GAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATAEST: gi|29614662|gb|CB619675.1|CB619675
genomic: TTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgat ... ctgttctcagGAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATA
EST: TTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG GAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATA
genomic: TTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgat ... ctgttctcagGAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATA
ttagccagttttatgttaatatactattatactcattcttgactactgttctcagGAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATAAGGAATTATTGTGACGTGACATTGATGTCACTGGCATATGCTGGGACAG
tcttgac putative branch site (score: 22)
ctgttctc putative PPT
ttttatgttaatatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatatgtaacatgcaacctcttcatgaacctacaccgtctgtttttagccagttttatgttaatatactattatactcattcttgactactgttctcagGAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATAAGGAATTATTGTGACGTGACATTGATGTCACTGGCATATGCTGGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
-catatgt
- - - - -acatgca
- - - - - - - - - - cttcatg
- - - - - - - - - - - - - - -cctacac
- - - - - - - - - - - - - - - - - - - tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgtt