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gtgagttttcttggatcaaaccgtttctttgaactttttattcttcttggaagatcaaagtaatggtgttattcatgttttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGGACAGTGTATGGGCTCATAGTGACACAGTATGGAGACCTAGAACAAATCA
species | Oryza sativa |
transcript | LOC_Os06g36090.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGGEST: gi|88675207|gb|CI727322.1|CI727322
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTGGTACTACTGGCEST: gi|88671120|gb|CI725236.1|CI725236
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGC
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTGGTAEST: gi|88674502|gb|CI728615.1|CI728615
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTA
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTEST: gi|88668092|gb|CI722831.1|CI722831
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCT
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGAACA AGGATTCCCAAATGGTGGEST: gi|29673479|gb|CB669754.1|CB669754
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGG
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGGEST: gi|88908493|gb|CI713052.1|CI713052
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGEST: gi|38470736|gb|CF954867.1|CF954867
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATG
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGGEST: gi|86260714|gb|CI000162.1|CI000162
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGGEST: gi|88574669|gb|CI666438.1|CI666438
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGGEST: gi|88904455|gb|CI711763.1|CI711763
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTGEST: gi|157652524|gb|EX452158.1|EX452158
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTG
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTGGTACEST: gi|88985544|gb|CI003020.1|CI003020
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTAC
EST: CGTTCTATTCCTTGTCCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGAGGATCTGGTACTACTGGCTTTGCCCATTGGCATGGEST: gi|33682388|gb|CF310627.1|CF310627
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
ctttttattcttcttggaagatcaaagtaatggtgttattcatgttttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGGACAGTGTATGGGCTCATAGTGACACAGTATGGAGACCTAGAACAAATCA
ttttatttc CT-rich tract
ttattcatgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcttggatcaaaccgtttctttgaactttttattcttcttggaagatcaaagtaatggtgttattcatgttttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGGACAGTGTATGGGCTCATAGTGACACAGTATGGAGACCTAGAACAAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA