1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtctgtaaatctatttgttatcttcctatacttaggaagtaacctgtctcatcaacttctttttttccttttgcttttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGGAGGCATTCTGTCACCTTGTTTCGTTCCAGATATTTTTGCCTTTGGCCA
species | Oryza sativa |
transcript | LOC_Os06g10280.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|88559034|gb|CI489572.1|CI489572
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: AAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTNTTCTGAGTTCTTACATAGCAATAGEST: gi|88469175|gb|CI406446.1|CI406446
genomic: AAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|88265983|gb|CI376885.1|CI376885
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|86861509|gb|CI328196.1|CI328196
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|86435856|gb|CI107089.1|CI107089
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|86425382|gb|CI070479.1|CI070479
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|86536568|gb|CI176774.1|CI176774
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|86869993|gb|CI317914.1|CI317914
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTA-TGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|88551458|gb|CI481515.1|CI481515
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|88254291|gb|CI352917.1|CI352917
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: AATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|89163723|gb|CI100613.1|CI100613
genomic: AATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|88524956|gb|CI453573.1|CI453573
genomic: GCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: TNTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|38483180|gb|CF966982.1|CF966982
genomic: T-TTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGEST: gi|88250958|gb|CI349188.1|CI349188
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
EST: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAG GATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
genomic: GTTTCTGTTGTGCATGAAATCAAGGATGCTCTTGGAATCTATTGCTTCAGgtctgtaaat ... tttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAG
cttaggaagtaacctgtctcatcaacttctttttttccttttgcttttttgacagGATAACTAGAAAAGAGGCTTGAATGTGTTCTGAGTTCTTACATAGCAATAGGAGGCATTCTGTCACCTTGTTTCGTTCCAGATATTTTTGCCTTTGGCCA
aagtaac putative branch site (score: 2)
cctgtctcatcaactt CT-rich tract
ttcttttttt TA-rich tract