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gtattatcatgtgcttcttttccctagtccctaccaaataacatggcaaagcttgtgcgttacatattcatcgataagcatcatggtctcaattgcacattagATCTTTGAGAATCGCGCTCATGAAGTTGGGAGGGAGAGGCAAGTGTTCGTCGATTTCTTCAGCAACCCCGAGCGACTCAAGAATCAAGTCAGAGAGCTTA
species | Oryza sativa |
transcript | LOC_Os06g08730.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GAAGTTTCTGTGGAAGAAGTAACGAAGGCTCGCACCCTAAAGATAAAG ATCTTTGAGAATCGCGCTCATGAAGTTGGGAGGGAGAGGCAAGTGTTCGTCEST: gi|33795400|gb|CF323570.1|CF323570
genomic: GAAGTTTCTGTGGAAGAAGTAACGAAGGCTCGCACCCAAAAGATAAAGgtattatcat ... tgcacattagATCTTTGAGAATCGCGCTCATGAAGTTGGGAGGGAGAGGCAAGTGTTCGTC
EST: TTGAAGTTTCTGTGGAAGAAGTAACGAAGGCTCGCACCCAAAAGATAAAG ATCTTTGAGAATCGCGCTCATGAAGTTGGGAGGGAGAGGCAAGTGTTCGTC
genomic: TTGAAGTTTCTGTGGAAGAAGTAACGAAGGCTCGCACCCAAAAGATAAAGgtattatcat ... tgcacattagATCTTTGAGAATCGCGCTCATGAAGTTGGGAGGGAGAGGCAAGTGTTCGTC
aagcttgtgcgttacatattcatcgataagcatcatggtctcaattgcacattagATCTTTGAGAATCGCGCTCATGAAGTTGGGAGGGAGAGGCAAGTGTTCGTCGATTTCTTCAGCAACCCCGAGCGACTCAAGAATCAAGTCAGAGAGCTTA
ttacatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattatcatgtgcttcttttccctagtccctaccaaataacatggcaaagcttgtgcgttacatattcatcgataagcatcatggtctcaattgcacattagATCTTTGAGAATCGCGCTCATGAAGTTGGGAGGGAGAGGCAAGTGTTCGTCGATTTCTTCAGCAACCCCGAGCGACTCAAGAATCAAGTCAGAGAGCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT