Sequence
atgc intronic sequence ATGC exonic sequence...aattccatcattcagatgagtttgtagtttgctttagtagttgtgaaacatacaaaatactcgaggcttatatttcatttctgctgaatttggatttcagTTTATCCAGTTGCGTTTGGACCCCGCTAGCAGCAACACGCTTCCTGCCAGTGGAAATGATTCTGTTACACAAAGCCTCAGTGTCACAAATAACCAACATG
Basic information
species | Oryza sativa |
transcript | LOC_Os06g07090.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os06g07090.2 (Oryza sativa), 3'ss of exon 17
lower sequence: GRMZM2G030144_T03 (Zea mays), 3'ss of exon 16
aattccatcattcagatgagtttgtagtttgctttagtagttgtgaaacatacaaaatactcgaggctt----atatttcatttctgctgaatttggatttcagTTTATCCAGTTGCGTTTGGACCCCGCTAGCAGCAACACGCTTCCTGCCAGTGGAAATGATTCTGTTACACAAAGCCTCAGTGTCACAAATAACCAACATG
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--tactgatgatgaaattg--ccatagataagatatgtatataactgaaattaaaaatggctgtactttcctaacatttgctgttttgctcacctgtgtttcagTTCATCCAGTTGCGTTTGGACCCAGCGAGCAGCAGCACTCTTCCTGCCAGTGGAAATGGGTCAGTTACACAAAGCCTCAGTGTCACCAACAACCAGCATG
upper sequence: LOC_Os06g07090.2 (Oryza sativa), 3'ss of exon 17
lower sequence: GRMZM2G017421_T02 (Zea mays), 3'ss of exon 17
-----aatt-ccatcattcagatgagtttgtagtttgctttagtagttgtgaaacatacaaaatactcgaggcttatatttcatttctgctgaatttggatttcagTTTATCCAGTTGCGTTTGGACCCCGCTAGCAGCAACACGCTTCCTGCCAGTGGAAATGATTCTGTTACACAAAGCCTCAGTGTCACAAATAACCAACATG
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ggtgaaattatcgcagataagatatgtttataactggcattaaaaggtctagt---ttcgtaacatttgatgttttg--ctaacctctgctgc-cctgtgtttcagTTCATCCAGTTGCGTTTGGACCCAGCTAGCAGCAGCACTCTTCCTGCCAGTGGAAATGTGTCAGTCACACAAAGCCTCAGTGTCACTAACAACCAACATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86430463|gb|CI082886.1|CI082886EST: TGACATCTAATACATTCACGGATTTCATCTTTCAGGCAGCTGTACCAAAG TTTATCCAGTTGCGTTTGGACCCCGCTAGCAGCAACACGCTTCCTGCCAGT
genomic: TGACATCTAATACATTCACGGATTTCATCTTTCAGGCAGCTGTACCAAAGgtattacctt ... tggatttcagTTTATCCAGTTGCGTTTGGACCCCGCTAGCAGCAACACGCTTCCTGCCAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacatacaaaatactcgaggcttatatttcatttctgctgaatttggatttcagTTTATCCAGTTGCGTTTGGACCCCGCTAGCAGCAACACGCTTCCTGCCAGTGGAAATGATTCTGTTACACAAAGCCTCAGTGTCACAAATAACCAACATG
ttatatttcatttct TA-rich tract